Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   SC10_RS13540 Genome accession   NZ_CP010524
Coordinates   2737642..2738706 (-) Length   354 a.a.
NCBI ID   WP_025811157.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain BL-09     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2732642..2743706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC10_RS13495 (SC10_B2orf04089) tapA 2733136..2733864 (-) 729 WP_020452169.1 amyloid fiber anchoring/assembly protein TapA -
  SC10_RS13500 (SC10_B2orf04091) - 2734142..2734462 (+) 321 WP_023855188.1 YqzG/YhdC family protein -
  SC10_RS13505 (SC10_B2orf04092) - 2734492..2734674 (-) 183 WP_020452171.1 YqzE family protein -
  SC10_RS13510 (SC10_B2orf04093) comGG 2734763..2735128 (-) 366 WP_025811163.1 competence type IV pilus minor pilin ComGG -
  SC10_RS13515 (SC10_B2orf04094) comGF 2735140..2735622 (-) 483 WP_230588654.1 competence type IV pilus minor pilin ComGF -
  SC10_RS13520 (SC10_B2orf04095) comGE 2735537..2735884 (-) 348 WP_025811161.1 competence type IV pilus minor pilin ComGE -
  SC10_RS13525 (SC10_B2orf04096) comGD 2735868..2736305 (-) 438 WP_020452175.1 competence type IV pilus minor pilin ComGD -
  SC10_RS13530 (SC10_B2orf04098) comGC 2736311..2736604 (-) 294 WP_020452176.1 competence type IV pilus major pilin ComGC Machinery gene
  SC10_RS13535 (SC10_B2orf04100) comGB 2736618..2737652 (-) 1035 WP_035338372.1 competence type IV pilus assembly protein ComGB Machinery gene
  SC10_RS13540 (SC10_B2orf04102) comGA 2737642..2738706 (-) 1065 WP_025811157.1 competence type IV pilus ATPase ComGA Machinery gene
  SC10_RS13545 (SC10_B2orf04105) - 2738864..2739703 (-) 840 WP_035338373.1 STAS domain-containing protein -
  SC10_RS13555 (SC10_B2orf04107) - 2739945..2740322 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  SC10_RS13560 (SC10_B2orf04108) - 2740533..2740778 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  SC10_RS13565 (SC10_B2orf04109) - 2740814..2741452 (-) 639 WP_020452181.1 MBL fold metallo-hydrolase -
  SC10_RS22155 (SC10_B2orf04111) - 2741608..2741781 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  SC10_RS13575 (SC10_B2orf04112) - 2741842..2742156 (-) 315 WP_020452182.1 MTH1187 family thiamine-binding protein -
  SC10_RS13580 (SC10_B2orf04113) - 2742172..2743281 (-) 1110 WP_035338374.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39797.28 Da        Isoelectric Point: 9.1063

>NTDB_id=138977 SC10_RS13540 WP_025811157.1 2737642..2738706(-) (comGA) [Bacillus paralicheniformis strain BL-09]
MYTIESLSGRLIDEAYRMKASDIHIVPGEKEAVVRFRIDDELFQKDRLTRNECSRLISHFKFLSSMDIGERRLPQSGALT
LYINRQPVHLRMSTLPTIHDESLVIRLLPKMSSKPLTKLSLFPSATFKLLSFLKHSHGLILFTGPTGSGKTTTLYSLIEY
AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH
AKNAKGAIYRLLEFGVDMTEIEQTLVAISAQRLVGLVCPFCGDSCSLYCRLSRPVRRASVFELLYGKSLNLCIEEAKGRC
GDIKTETLKTLIQKGIALGYLPSNTYERWIGHED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=138977 SC10_RS13540 WP_025811157.1 2737642..2738706(-) (comGA) [Bacillus paralicheniformis strain BL-09]
TTGTACACGATTGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGTCAGACATTCATATTGTTCC
CGGTGAAAAAGAGGCGGTGGTTCGCTTCAGGATTGATGATGAACTTTTTCAAAAAGACAGATTAACGAGAAATGAGTGCT
CAAGGCTCATTTCTCACTTTAAATTCCTTTCTTCGATGGATATTGGGGAAAGACGGCTGCCGCAAAGCGGAGCTTTGACT
CTTTATATCAACCGTCAGCCCGTTCATTTAAGAATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT
TCTTCCCAAGATGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTTCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA
AGCATTCCCACGGATTAATTCTGTTCACCGGTCCGACAGGCTCGGGGAAAACGACAACACTCTATTCTTTAATCGAATAC
GCTAAGCGGCATTTTAAGCGAAACATCATTACCTTGGAAGACCCTGTTGAATCAAGAAGCGAAAACATTTTGCAAGTGCA
AGTAAACGAAAAAGCTGGCATGACTTATTCTGCGGGGTTGAAGGCGGTGCTTCGCCACGATCCGGACATGATCATCCTCG
GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACAGGACACCTTGTTTTATCGAGCATGCAT
GCGAAAAATGCCAAAGGCGCAATATACAGGCTGCTCGAGTTCGGCGTTGATATGACAGAAATTGAACAAACACTGGTCGC
AATCAGCGCCCAGCGCCTCGTCGGTCTCGTCTGCCCGTTTTGCGGCGACAGCTGCTCTTTATATTGCAGATTGTCGAGGC
CTGTGAGAAGAGCAAGCGTCTTCGAGCTTTTGTACGGAAAAAGCCTCAATCTCTGCATCGAAGAAGCAAAAGGCAGGTGC
GGTGACATAAAAACAGAAACTTTGAAAACGCTGATCCAGAAGGGAATAGCACTCGGATATCTGCCGTCGAATACTTATGA
ACGCTGGATAGGCCATGAAGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

67.797

100

0.678
  pilB Vibrio cholerae strain A1552

38.671

93.503

0.362

Multiple sequence alignment