Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SP68_RS16950 Genome accession   NZ_CP010523
Coordinates   3599673..3600269 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain DSM 15968     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3594673..3605269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP68_RS16935 (SP68_23470) helD 3594881..3596935 (-) 2055 WP_016160584.1 DNA helicase IV -
  SP68_RS16940 (SP68_23465) - 3597060..3597506 (+) 447 WP_012542294.1 YccF domain-containing protein -
  SP68_RS16945 (SP68_23460) yccS 3597524..3599659 (+) 2136 WP_008805895.1 YccS family putative transporter -
  SP68_RS16950 (SP68_23455) sxy/tfoX 3599673..3600269 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  SP68_RS16955 (SP68_23450) sulA 3600620..3601129 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  SP68_RS16960 (SP68_23445) ompA 3601482..3602534 (+) 1053 WP_008805892.1 porin OmpA -
  SP68_RS16965 (SP68_23440) matP 3602645..3603097 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  SP68_RS16970 (SP68_23435) - 3603283..3605040 (+) 1758 WP_012968609.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=138924 SP68_RS16950 WP_012542296.1 3599673..3600269(-) (sxy/tfoX) [Klebsiella variicola strain DSM 15968]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=138924 SP68_RS16950 WP_012542296.1 3599673..3600269(-) (sxy/tfoX) [Klebsiella variicola strain DSM 15968]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment