Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PGS_RS06290 Genome accession   NZ_CP013131
Coordinates   1463056..1463919 (-) Length   287 a.a.
NCBI ID   WP_004585131.1    Uniprot ID   A0A099WY42
Organism   Porphyromonas gingivalis A7A1-28     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1458056..1468919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGS_RS06265 (PGS_00013100) - 1458315..1459532 (-) 1218 WP_004585136.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  PGS_RS06270 (PGS_00013110) - 1459535..1461490 (-) 1956 WP_058019140.1 LptF/LptG family permease -
  PGS_RS06275 (PGS_00013120) rplI 1461766..1462305 (-) 540 WP_013816345.1 50S ribosomal protein L9 -
  PGS_RS06280 (PGS_00013130) rpsR 1462330..1462602 (-) 273 WP_004585133.1 30S ribosomal protein S18 -
  PGS_RS06285 (PGS_00013140) rpsF 1462606..1462959 (-) 354 WP_004585132.1 30S ribosomal protein S6 -
  PGS_RS06290 (PGS_00013150) rpoS 1463056..1463919 (-) 864 WP_004585131.1 sigma-70 family RNA polymerase sigma factor Regulator
  PGS_RS06295 (PGS_00013160) - 1464109..1465605 (-) 1497 WP_021662342.1 DegQ family serine endoprotease -
  PGS_RS06300 (PGS_00013170) - 1465822..1466079 (-) 258 WP_004585129.1 type B 50S ribosomal protein L31 -
  PGS_RS11580 - 1466300..1466479 (+) 180 WP_370576211.1 DUF1661 domain-containing protein -
  PGS_RS06305 (PGS_00013180) guaA 1466796..1468316 (+) 1521 WP_058019141.1 glutamine-hydrolyzing GMP synthase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32602.30 Da        Isoelectric Point: 6.9850

>NTDB_id=138903 PGS_RS06290 WP_004585131.1 1463056..1463919(-) (rpoS) [Porphyromonas gingivalis A7A1-28]
MRQLKISKSITNRESASLDKYLQEIGREDLISVEEEVELAQAIKRGDRKALEKLTRANLRFVVSVAKQYQNQGLSLPDLI
NEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGTLNKIIKAQQKFEQENERRPSSAELAK
ELDIAEDKIADTMKVSGRHISVDAPFVEGEDNSLLDVLVNEDTPNTDKSLINESLAVEIERALSTLTEREAEIVKLFFGI
AGCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNKCKNLKGYLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=138903 PGS_RS06290 WP_004585131.1 1463056..1463919(-) (rpoS) [Porphyromonas gingivalis A7A1-28]
ATGAGGCAACTTAAAATTTCCAAGTCGATCACGAATCGTGAAAGCGCGTCTCTGGACAAGTATCTGCAGGAGATCGGTCG
CGAGGACCTGATCTCGGTCGAAGAAGAAGTAGAGTTGGCGCAAGCCATTAAACGCGGTGATCGCAAAGCTCTTGAAAAGC
TGACTCGTGCCAATCTTCGTTTCGTAGTATCCGTAGCCAAACAATACCAGAATCAGGGTCTCAGTTTGCCGGACTTGATC
AATGAAGGAAACCTCGGATTGATCAAAGCGGCAGAGAAATTCGACGAAACGCGCGGTTTTAAGTTTATCTCGTATGCCGT
ATGGTGGATCCGCCAGTCCATCCTGCAAGCATTGGCCGAGCAGTCTCGTATCGTCCGCCTGCCACTGAATCAGGTGGGAA
CACTCAACAAGATCATCAAGGCCCAGCAGAAATTCGAGCAGGAGAATGAGCGTCGCCCCTCATCAGCAGAGTTGGCTAAG
GAGCTGGACATCGCAGAAGACAAAATTGCCGATACGATGAAAGTATCCGGACGGCATATCTCTGTGGATGCTCCTTTCGT
GGAAGGTGAAGACAACAGCCTGCTGGATGTACTCGTCAATGAGGATACCCCCAATACGGACAAGTCGCTGATCAATGAAT
CGCTGGCCGTTGAGATAGAAAGAGCTTTGTCCACACTGACGGAGCGCGAAGCAGAGATCGTGAAGCTGTTCTTCGGCATT
GCCGGCTGTCAAGAGATGACACTGGAGGAAATCGGCGACAAATTCGGTCTCACCCGCGAACGCGTCCGTCAGATAAAAGA
GAAGGCTATTCGCCGTTTGCGACAGAGCAACAAGTGCAAGAATCTGAAAGGTTATCTCGGCTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(222-275)

Sigma-70 region 2 (Sigma70_r2)

(56-123)

Sigma-70 region 3 (Sigma70_r3)

(134-202)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(17-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099WY42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.176

88.85

0.366

Multiple sequence alignment