Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ST12_RS15455 Genome accession   NZ_CP010521
Coordinates   3481643..3482596 (-) Length   317 a.a.
NCBI ID   WP_012450393.1    Uniprot ID   A0A0L9YAX7
Organism   Clostridium botulinum strain NCTC 8550     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3476643..3487596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST12_RS16305 - 3476798..3476956 (-) 159 WP_012451138.1 DUF1540 domain-containing protein -
  ST12_RS15435 (ST12_15435) - 3477224..3478312 (+) 1089 WP_012450204.1 PRK06851 family protein -
  ST12_RS15440 (ST12_15440) - 3478735..3479679 (-) 945 WP_012450881.1 siderophore ABC transporter substrate-binding protein -
  ST12_RS15445 (ST12_15445) - 3479951..3480706 (-) 756 WP_012451100.1 ATP-binding cassette domain-containing protein -
  ST12_RS15450 (ST12_15450) - 3480703..3481653 (-) 951 WP_012451721.1 iron chelate uptake ABC transporter family permease subunit -
  ST12_RS15455 (ST12_15455) ceuB 3481643..3482596 (-) 954 WP_012450393.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  ST12_RS15460 (ST12_15460) - 3482789..3483550 (+) 762 WP_012451198.1 AraC family transcriptional regulator -
  ST12_RS15465 (ST12_15465) sulP 3484075..3485736 (-) 1662 WP_004443280.1 sulfate permease -
  ST12_RS15470 (ST12_15470) - 3486333..3486833 (-) 501 WP_040968351.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34885.54 Da        Isoelectric Point: 9.7561

>NTDB_id=138903 ST12_RS15455 WP_012450393.1 3481643..3482596(-) (ceuB) [Clostridium botulinum strain NCTC 8550]
MKKIYLLILLVILSIASLFIGVSDISLSDIISLDSEKINLILIGRLPRLISIIFAGVGMSISGLIMQQISRNKFVSPTTA
GTIDFAKLGILVCMIVFPQATMMNKMLLSFTFAILGTLLFMQIQKKIKIKNIVFIPLIGMMLGKIVGSITMFFSYKYDLI
QNINSWMEGDFSLIMKGKYELLYISIPLVIIAAIYANKFTIAGMGEDFCTNLGIKYNRVVNLGLVIVALISSVVVITIGA
IPFLGIIVPNIVTMYYGDNLKNVLGLTALIGPIFLLICDILGRLIIYPYEISISLTVGVIGSVAFLYLIFRRSGHEA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=138903 ST12_RS15455 WP_012450393.1 3481643..3482596(-) (ceuB) [Clostridium botulinum strain NCTC 8550]
ATGAAAAAAATATACTTGTTAATATTGCTGGTAATATTGTCAATAGCTTCATTATTTATTGGAGTAAGTGATATATCATT
ATCAGATATTATTAGTCTAGATAGTGAAAAAATAAACCTTATATTAATTGGTAGATTGCCAAGGCTTATAAGTATAATCT
TTGCTGGAGTTGGGATGAGTATAAGCGGACTTATAATGCAACAGATAAGTAGAAATAAATTTGTTTCACCTACAACTGCT
GGAACAATAGATTTTGCTAAATTAGGAATATTAGTATGCATGATTGTATTTCCACAGGCAACTATGATGAATAAAATGCT
TTTATCATTTACATTTGCAATACTTGGAACACTGTTATTTATGCAAATACAAAAGAAAATAAAGATTAAAAATATAGTTT
TTATACCTCTTATAGGTATGATGCTTGGAAAAATAGTTGGTTCAATAACTATGTTTTTCTCTTATAAGTATGATCTTATC
CAAAATATAAATTCATGGATGGAAGGCGATTTCTCATTAATTATGAAAGGGAAATATGAACTATTATATATAAGTATACC
TCTTGTAATAATAGCAGCTATATATGCTAATAAGTTTACTATTGCTGGAATGGGAGAGGACTTTTGTACAAATCTAGGAA
TAAAGTATAATCGTGTTGTTAATTTAGGATTAGTAATAGTAGCATTAATTTCATCAGTTGTAGTTATAACAATAGGGGCA
ATACCATTCTTAGGTATTATAGTGCCTAATATAGTTACTATGTATTATGGAGATAATTTAAAGAATGTATTAGGACTTAC
AGCCTTAATAGGACCTATATTTTTATTAATATGTGATATTTTAGGAAGACTTATTATTTATCCATATGAAATATCAATAA
GCTTAACAGTAGGGGTAATAGGTAGCGTAGCATTCCTTTACTTAATATTTAGGAGGTCTGGTCATGAGGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L9YAX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.839

98.107

0.489

Multiple sequence alignment