Detailed information
Bioinformatically predicted
Overview
| Name | ctsF | Type | Machinery gene |
| Locus tag | RC08_RS06875 | Genome accession | NZ_CP010510 |
| Coordinates | 1322573..1323751 (-) | Length | 392 a.a. |
| NCBI ID | WP_002932300.1 | Uniprot ID | A0A5T1D2G9 |
| Organism | Campylobacter jejuni strain CJ677CC040 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1317573..1328751
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RC08_RS06845 (RC08_06835) | - | 1318115..1318456 (+) | 342 | WP_002932295.1 | hypothetical protein | - |
| RC08_RS06850 (RC08_06840) | flgM | 1318519..1318716 (+) | 198 | WP_002792053.1 | flagellar biosynthesis anti-sigma factor FlgM | - |
| RC08_RS06855 (RC08_06845) | - | 1318758..1319192 (+) | 435 | WP_002779263.1 | flagellar protein FlgN | - |
| RC08_RS06860 (RC08_06850) | flgK | 1319202..1321028 (+) | 1827 | WP_002932296.1 | flagellar hook-associated protein FlgK | - |
| RC08_RS06865 (RC08_06855) | - | 1321045..1321809 (+) | 765 | WP_002932297.1 | TIGR02757 family protein | - |
| RC08_RS06870 (RC08_06860) | - | 1321812..1322576 (+) | 765 | WP_002932298.1 | TSUP family transporter | - |
| RC08_RS06875 (RC08_06865) | ctsF | 1322573..1323751 (-) | 1179 | WP_002932300.1 | type II secretion system F family protein | Machinery gene |
| RC08_RS06880 (RC08_06870) | ctsE | 1323748..1325307 (-) | 1560 | WP_032598692.1 | GspE/PulE family protein | Machinery gene |
| RC08_RS06885 (RC08_06875) | ctsX | 1325297..1325884 (-) | 588 | WP_002932306.1 | hypothetical protein | Machinery gene |
| RC08_RS06890 (RC08_06880) | ctsP | 1325888..1326496 (-) | 609 | WP_002932308.1 | ATP-binding protein | Machinery gene |
| RC08_RS06895 (RC08_06885) | mshL | 1326489..1327901 (-) | 1413 | Protein_1359 | pilus (MSHA type) biogenesis protein MshL | - |
| RC08_RS06900 (RC08_06890) | ctsR | 1327879..1328190 (-) | 312 | WP_002932309.1 | hypothetical protein | Machinery gene |
Sequence
Protein
Download Length: 392 a.a. Molecular weight: 45674.31 Da Isoelectric Point: 9.0938
>NTDB_id=138817 RC08_RS06875 WP_002932300.1 1322573..1323751(-) (ctsF) [Campylobacter jejuni strain CJ677CC040]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINF
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINF
Nucleotide
Download Length: 1179 bp
>NTDB_id=138817 RC08_RS06875 WP_002932300.1 1322573..1323751(-) (ctsF) [Campylobacter jejuni strain CJ677CC040]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCCAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGCGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCAGGTATAAATTTTTAA
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCCAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGCGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCAGGTATAAATTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsF | Campylobacter jejuni subsp. jejuni 81-176 |
98.469 |
100 |
0.985 |