Detailed information NTG0138740

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AQ622_RS14610
• Genome accession: NZ_CP013113
• Coordinates: 3073518..3076067 (-)
• Length: 849 a.a.
• NCBI ID: WP_003122694.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain Paer4_119
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3068518..3081067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AQ622_RS14580 (AQ622_02813)	-	3068688..3069329 (-)	642	WP_003110901.1	LuxR C-terminal-related transcriptional regulator	-
AQ622_RS14585 (AQ622_02814)	-	3069605..3070000 (+)	396	WP_003089513.1	DUF4280 domain-containing protein	-
AQ622_RS14590 (AQ622_02815)	-	3070023..3070559 (-)	537	WP_003122691.1	toxin-antitoxin system YwqK family antitoxin	-
AQ622_RS14595 (AQ622_02816)	tssI	3070570..3072576 (-)	2007	WP_003122692.1	type VI secretion system tip protein VgrG	-
AQ622_RS14600	-	3072576..3072764 (-)	189	WP_003104930.1	hypothetical protein	-
AQ622_RS14605	-	3072924..3073496 (-)	573	WP_003122693.1	hypothetical protein	-
AQ622_RS14610 (AQ622_02817)	clpC	3073518..3076067 (-)	2550	WP_003122694.1	type VI secretion system ATPase TssH	Regulator
AQ622_RS14615 (AQ622_02818)	tssG	3076069..3077085 (-)	1017	WP_003104928.1	type VI secretion system baseplate subunit TssG	-
AQ622_RS14620 (AQ622_02819)	tssF	3077049..3078842 (-)	1794	WP_003122695.1	type VI secretion system baseplate subunit TssF	-
AQ622_RS14625 (AQ622_02820)	tssE	3078826..3079251 (-)	426	WP_003122696.1	type VI secretion system baseplate subunit TssE	-
AQ622_RS14630 (AQ622_02821)	-	3079264..3079761 (-)	498	WP_003089495.1	Hcp family type VI secretion system effector	-

Sequence

Protein

• Length: 849 a.a.
• Molecular weight: 92426.73 Da
• Isoelectric Point: 5.1045

>NTDB_id=138740 AQ622_RS14610 WP_003122694.1 3073518..3076067(-) (clpC) [Pseudomonas aeruginosa strain Paer4_119]
MELAALIGRLNPDCRRALERAAQRCLQRTHHYVEIEHLLLELLDIDGGDFACLLPRFGLERDALVAEINLSLELFKAGNT
RTPALSAHTIGLLEDAVVHASVLGQAQIRSGLLLLALLDREERRALLLNSASSLLRIPHEALQANLLEWIQASREQPPAP
NRPAVGGDKPESAPDPLLDQYTQDLTAEARAGRIDPIVGRDGEIRQCVDILLRRRQNNPILVGAPGVGKTAVVEGLALRI
AAGEVPPSLQEVILRVLDLGLLQAGASMKGEFEQRLKGVIDAVRNSAQPIILFIDEAHTLIGAGGAEGGSDAANLLKPAL
ARGELRTLAATTWLEYKKYFEKDPALTRRFQLVQVEEPDEATAVEMLRGVAGKLELHHGVQIMDAAIVDAVKLSHRYISG
RQLPDKAISVLDTACARVALGQHDVPPPLESLRHREQALEEELQRLRREQATGLDHSARISALESESGDNRRTIRELETR
WDEEREAVRELLDTRRELLALSESADAAKPDEELDGRIDHLAAELARLAAGLEAIRQDDPLVPEQVDSRTVAAVIAGWTG
IPVGKMLADEAHAIRSLAQRMGQRVMGQEAALGAIAQRIQAYRAGLSDPAKPVGVFLLPGPTGVGKTETAYALADALYGG
ERNLISINLSEYQEAHTVSQLKGAPPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPDVLEAFYNVFDKGVMEDGTGL
VVDFRNTVILATSNVGAELLLDSPAEQVATPAFDERLRKVLLQTFRPAFLARMTVVPYRPLEEATLEGIVVAKLEKLRER
YKAATGKQFDFDPAIVKAVLAKCSAAGARDIENVLMAQVTGKLAEWVLE

Nucleotide

• Length: 2550 bp

>NTDB_id=138740 AQ622_RS14610 WP_003122694.1 3073518..3076067(-) (clpC) [Pseudomonas aeruginosa strain Paer4_119]
ATGGAACTCGCCGCCCTGATCGGCCGCCTCAACCCGGACTGTCGCCGCGCCCTGGAGCGCGCCGCGCAACGCTGCCTGCA
ACGCACCCATCATTACGTAGAGATCGAGCACCTGCTGCTGGAACTGCTGGACATCGACGGCGGCGACTTCGCCTGCCTGC
TGCCGCGCTTCGGCCTGGAGCGCGACGCCCTGGTCGCCGAGATCAACCTGTCGCTGGAGCTGTTCAAGGCCGGCAATACC
CGCACTCCGGCGCTGTCCGCGCACACCATCGGCCTGCTCGAAGACGCCGTGGTCCACGCCAGCGTGCTCGGCCAGGCGCA
GATTCGTTCCGGCCTGCTGCTGCTCGCCCTGCTCGACCGCGAGGAGCGCCGCGCCCTGTTGCTGAACAGCGCGTCGTCGC
TGCTGCGGATTCCCCACGAGGCCTTGCAGGCCAACCTGCTGGAGTGGATCCAGGCCTCCCGCGAACAGCCGCCCGCGCCG
AACCGCCCGGCGGTAGGCGGCGACAAGCCGGAAAGCGCCCCGGACCCGCTGCTCGACCAGTACACCCAGGACCTCACCGC
CGAAGCCCGCGCCGGGCGCATCGACCCCATAGTCGGGCGCGACGGGGAGATCCGCCAGTGCGTCGACATCCTCCTGCGCC
GGCGGCAGAACAACCCGATCCTGGTCGGCGCGCCGGGCGTCGGCAAGACCGCTGTGGTCGAGGGCCTGGCCCTGCGCATC
GCCGCCGGCGAGGTGCCGCCGTCGTTGCAGGAGGTGATCCTGCGGGTGCTCGACCTCGGCCTGTTGCAGGCCGGCGCCAG
CATGAAGGGCGAGTTCGAGCAGCGCCTCAAGGGCGTGATCGACGCCGTGCGCAACAGCGCGCAGCCGATCATCCTGTTCA
TCGACGAGGCGCACACGCTGATCGGCGCCGGCGGCGCGGAAGGCGGCAGCGACGCCGCCAACCTGCTCAAGCCGGCCCTG
GCGCGCGGCGAGTTGCGCACCCTGGCGGCCACCACCTGGCTGGAATACAAGAAATACTTCGAGAAGGACCCGGCGCTGAC
CCGGCGCTTCCAGTTGGTCCAGGTCGAGGAGCCGGACGAGGCCACCGCCGTGGAGATGCTGCGCGGCGTCGCCGGCAAGC
TGGAACTGCATCACGGCGTGCAGATCATGGACGCGGCCATCGTCGATGCGGTGAAGCTGTCGCACCGCTACATCTCCGGC
CGCCAGTTGCCGGACAAGGCGATCAGCGTGCTCGACACCGCCTGCGCGCGGGTCGCCCTCGGCCAGCACGACGTGCCGCC
GCCGCTGGAAAGCCTGCGCCATCGCGAGCAGGCGCTGGAAGAGGAATTGCAGCGGCTGCGCCGGGAACAGGCCACCGGCC
TCGACCACAGCGCGCGTATCAGCGCCCTGGAAAGCGAGTCGGGCGATAACCGCCGGACCATCCGCGAACTGGAGACCCGC
TGGGACGAGGAACGCGAAGCGGTGCGCGAACTGCTCGACACCCGCCGCGAATTGCTGGCCCTCAGCGAAAGCGCCGACGC
GGCCAAGCCCGACGAGGAACTGGACGGTCGCATCGACCACCTGGCCGCCGAACTGGCGCGCCTGGCGGCCGGCCTCGAAG
CCATCCGCCAGGACGACCCGCTGGTTCCCGAGCAGGTGGACTCGCGTACCGTGGCCGCGGTGATCGCCGGCTGGACCGGC
ATCCCGGTGGGCAAGATGCTCGCCGACGAAGCCCACGCCATCCGCTCCCTGGCCCAGCGCATGGGCCAGCGGGTGATGGG
CCAGGAGGCCGCCCTGGGCGCCATCGCCCAGCGCATCCAGGCCTATCGCGCCGGACTCAGCGACCCGGCCAAGCCGGTCG
GCGTATTCCTCCTCCCCGGTCCCACCGGCGTTGGCAAGACCGAGACCGCCTACGCCCTGGCCGACGCCCTCTACGGCGGC
GAACGCAACCTGATCAGCATCAACCTCTCCGAGTACCAGGAGGCCCACACCGTCAGCCAGCTCAAGGGCGCCCCCCCCGG
CTACGTCGGCTACGGCAGCGGCGGCGTGCTCACCGAAGCGGTGCGCCGCAAGCCCTATTCGGTGGTGCTGCTGGACGAGA
TCGAGAAAGCCCATCCGGACGTGCTGGAAGCCTTCTACAACGTGTTCGACAAGGGCGTGATGGAAGACGGCACCGGCCTG
GTGGTGGACTTCAGGAACACCGTGATCCTCGCCACCAGCAACGTCGGCGCCGAACTGCTGCTGGACAGCCCGGCCGAACA
GGTCGCCACCCCGGCCTTCGACGAGCGCCTGCGCAAAGTCCTGCTGCAAACCTTCCGCCCGGCGTTCCTCGCGCGCATGA
CCGTGGTGCCTTACCGGCCGCTGGAGGAAGCCACCCTGGAAGGCATCGTCGTGGCCAAGCTGGAAAAACTGCGGGAACGC
TACAAGGCCGCTACCGGCAAACAGTTCGACTTCGACCCGGCCATCGTCAAGGCCGTGCTCGCCAAGTGCAGCGCGGCGGG
CGCGCGGGATATCGAGAACGTGCTGATGGCGCAGGTGACGGGGAAGTTGGCGGAGTGGGTGTTGGAGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (611-775)

• AAA lid domain (AAA_lid_9) (360-453)

• ATPase family associated with various cellular activities (AAA) (AAA) (220-332)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (781-848)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (21-71)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	36.934	100	0.375