Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ASE18_RS13545 Genome accession   NZ_CP013112
Coordinates   2746369..2746845 (+) Length   158 a.a.
NCBI ID   WP_057916007.1    Uniprot ID   -
Organism   Escherichia coli strain YD786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2741369..2751845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASE18_RS25120 - 2744400..2744630 (+) 231 Protein_2600 autotransporter outer membrane beta-barrel domain-containing protein -
  ASE18_RS13535 (ASE18_13535) - 2744958..2745776 (+) 819 WP_001234393.1 DUF932 domain-containing protein -
  ASE18_RS13540 (ASE18_13540) - 2745868..2746353 (+) 486 WP_001536436.1 antirestriction protein -
  ASE18_RS13545 (ASE18_13545) radC 2746369..2746845 (+) 477 WP_057916007.1 RadC family protein Machinery gene
  ASE18_RS13550 (ASE18_13550) - 2746914..2747135 (+) 222 WP_000692303.1 DUF987 domain-containing protein -
  ASE18_RS13555 (ASE18_13555) cbeA 2747209..2747583 (+) 375 WP_001605875.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ASE18_RS13560 (ASE18_13560) - 2747630..2748007 (+) 378 WP_057916008.1 TA system toxin CbtA family protein -
  ASE18_RS26935 (ASE18_13565) - 2748004..2748180 (+) 177 Protein_2607 DUF5983 family protein -
  ASE18_RS26940 (ASE18_13570) - 2748229..2748426 (+) 198 WP_023563519.1 DUF957 domain-containing protein -
  ASE18_RS13575 (ASE18_13575) - 2748511..2749353 (+) 843 WP_057916009.1 DUF4942 domain-containing protein -
  ASE18_RS13580 (ASE18_13580) yghD 2749634..2750170 (-) 537 WP_000942786.1 GspM family type II secretion system protein YghD -
  ASE18_RS13585 (ASE18_13585) gspL 2750172..2751350 (-) 1179 WP_000094970.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17697.39 Da        Isoelectric Point: 7.2020

>NTDB_id=138652 ASE18_RS13545 WP_057916007.1 2746369..2746845(+) (radC) [Escherichia coli strain YD786]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVPPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=138652 ASE18_RS13545 WP_057916007.1 2746369..2746845(+) (radC) [Escherichia coli strain YD786]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTAGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGTACC
ATCAACCGCACGGAAGTTCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGATACTGGCACA
CAATCACCCGTCCGGTGAAGTCCCCCCCAGTAAGGCTGACCGGCTTATTACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGACATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCCGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399