Detailed information NTG0138648

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ASE18_RS12095
• Genome accession: NZ_CP013112
• Coordinates: 2447627..2448619 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain YD786
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2442627..2453619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ASE18_RS12075 (ASE18_12075)	otnK	2443402..2444664 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
ASE18_RS12080 (ASE18_12080)	ygbL	2444661..2445299 (+)	639	WP_001278994.1	aldolase	-
ASE18_RS12085 (ASE18_12085)	ygbM	2445304..2446080 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ASE18_RS12090 (ASE18_12090)	ygbN	2446169..2447533 (+)	1365	WP_000104456.1	GntP family transporter	-
ASE18_RS12095 (ASE18_12095)	rpoS	2447627..2448619 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ASE18_RS12100 (ASE18_12100)	nlpD	2448682..2449776 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ASE18_RS12105 (ASE18_12105)	pcm	2449961..2450587 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ASE18_RS12110 (ASE18_12110)	surE	2450581..2451342 (-)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
ASE18_RS12115 (ASE18_12115)	truD	2451323..2452372 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ASE18_RS12120 (ASE18_12120)	ispF	2452369..2452848 (-)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ASE18_RS12125 (ASE18_12125)	ispD	2452848..2453558 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=138648 ASE18_RS12095 WP_000081550.1 2447627..2448619(-) (rpoS) [Escherichia coli strain YD786]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=138648 ASE18_RS12095 WP_000081550.1 2447627..2448619(-) (rpoS) [Escherichia coli strain YD786]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715