Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ASE18_RS11800 Genome accession   NZ_CP013112
Coordinates   2393469..2393984 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain YD786     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2388469..2398984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASE18_RS11775 (ASE18_11775) ygaZ 2389153..2389605 (+) 453 Protein_2264 L-valine exporter subunit YgaZ -
  ASE18_RS11780 (ASE18_11780) ygaH 2389595..2389930 (+) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  ASE18_RS11785 (ASE18_11785) emrR 2390021..2390551 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  ASE18_RS11790 (ASE18_11790) emrA 2390678..2391850 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ASE18_RS11795 (ASE18_11795) emrB 2391867..2393405 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  ASE18_RS11800 (ASE18_11800) luxS 2393469..2393984 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  ASE18_RS11805 (ASE18_11805) gshA 2394134..2395690 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  ASE18_RS11810 (ASE18_11810) yqaA 2395763..2396191 (-) 429 WP_001287457.1 YqaA family protein -
  ASE18_RS11815 (ASE18_11815) yqaB 2396188..2396754 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ASE18_RS11845 (ASE18_11845) csrA 2398212..2398397 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=138645 ASE18_RS11800 WP_001130207.1 2393469..2393984(-) (luxS) [Escherichia coli strain YD786]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=138645 ASE18_RS11800 WP_001130207.1 2393469..2393984(-) (luxS) [Escherichia coli strain YD786]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment