Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ASE18_RS08525 Genome accession   NZ_CP013112
Coordinates   1691185..1692612 (+) Length   475 a.a.
NCBI ID   WP_074155110.1    Uniprot ID   -
Organism   Escherichia coli strain YD786     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1686185..1697612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASE18_RS24845 - 1686352..1686723 (+) 372 WP_001295631.1 IS110 family transposase -
  ASE18_RS08500 (ASE18_08500) - 1686994..1687359 (+) 366 WP_089069062.1 EutP/PduV family microcompartment system protein -
  ASE18_RS08505 (ASE18_08505) tmaR 1687460..1687789 (-) 330 WP_000450409.1 DUF496 family protein -
  ASE18_RS08510 (ASE18_08510) yeeA 1687961..1689019 (-) 1059 WP_032181141.1 FUSC family protein -
  ASE18_RS08515 (ASE18_08515) sbmC 1689218..1689691 (-) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  ASE18_RS08520 (ASE18_08520) dacD 1689810..1690976 (-) 1167 WP_001383231.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  ASE18_RS08525 (ASE18_08525) sbcB 1691185..1692612 (+) 1428 WP_074155110.1 exodeoxyribonuclease I Machinery gene
  ASE18_RS08530 (ASE18_08530) tsuB 1692655..1692882 (-) 228 WP_000234896.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  ASE18_RS08535 (ASE18_08535) tsuA 1692896..1693954 (-) 1059 WP_000492339.1 thiosulfate utilization transporter TsuA/YeeE -
  ASE18_RS08540 (ASE18_08540) plaP 1694133..1695491 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  ASE18_RS26840 yoeI 1695481..1695543 (-) 63 WP_010723108.1 membrane protein YoeI -
  ASE18_RS08545 (ASE18_08545) yeeY 1695758..1696687 (-) 930 WP_032181145.1 LysR substrate-binding domain-containing protein -
  ASE18_RS08550 (ASE18_08550) yeeZ 1696733..1697557 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54517.80 Da        Isoelectric Point: 5.4700

>NTDB_id=138635 ASE18_RS08525 WP_074155110.1 1691185..1692612(+) (sbcB) [Escherichia coli strain YD786]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWTENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=138635 ASE18_RS08525 WP_074155110.1 1691185..1692612(+) (sbcB) [Escherichia coli strain YD786]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGACTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment