Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ASE18_RS03280 Genome accession   NZ_CP013112
Coordinates   661738..662214 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain YD786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 656738..667214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASE18_RS03265 (ASE18_03265) - 657154..660000 (+) 2847 WP_000820472.1 Ag43/Cah family autotransporter adhesin -
  ASE18_RS03270 (ASE18_03270) - 660327..661145 (+) 819 WP_001234732.1 DUF932 domain-containing protein -
  ASE18_RS03275 (ASE18_03275) - 661237..661722 (+) 486 WP_000214307.1 antirestriction protein -
  ASE18_RS03280 (ASE18_03280) radC 661738..662214 (+) 477 WP_001186726.1 JAB domain-containing protein Machinery gene
  ASE18_RS03285 (ASE18_03285) - 662277..662498 (+) 222 WP_000692298.1 DUF987 domain-containing protein -
  ASE18_RS03290 (ASE18_03290) - 662517..663200 (+) 684 WP_000086769.1 hypothetical protein -
  ASE18_RS03295 (ASE18_03295) - 663211..663591 (+) 381 WP_001360163.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ASE18_RS03300 (ASE18_03300) - 663668..664051 (+) 384 WP_000854686.1 TA system toxin CbtA family protein -
  ASE18_RS03305 (ASE18_03305) - 664048..664536 (+) 489 WP_001054233.1 DUF5983 family protein -
  ASE18_RS03310 (ASE18_03310) - 664553..664750 (+) 198 WP_000839253.1 DUF957 domain-containing protein -
  ASE18_RS03315 (ASE18_03315) - 664835..665677 (+) 843 WP_001274547.1 DUF4942 domain-containing protein -
  ASE18_RS03325 (ASE18_03325) ghrA 666148..667086 (+) 939 WP_000351311.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=138623 ASE18_RS03280 WP_001186726.1 661738..662214(+) (radC) [Escherichia coli strain YD786]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=138623 ASE18_RS03280 WP_001186726.1 661738..662214(+) (radC) [Escherichia coli strain YD786]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392