Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   AR446_RS09500 Genome accession   NZ_CP013034
Coordinates   455831..456193 (+) Length   120 a.a.
NCBI ID   WP_417903563.1    Uniprot ID   -
Organism   Campylobacter coli strain HC2-48     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450831..461193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR446_RS02335 (AR446_02335) - 452150..452953 (+) 804 WP_002777344.1 inverse autotransporter beta domain-containing protein -
  AR446_RS02340 (AR446_02340) - 452950..454326 (-) 1377 WP_002805571.1 cation:dicarboxylate symporter family transporter -
  AR446_RS02345 (AR446_02345) cetC 454583..455077 (+) 495 WP_002777342.1 energy taxis response protein CetC -
  AR446_RS09500 pilJ 455831..456193 (+) 363 WP_417903563.1 methyl-accepting chemotaxis protein Machinery gene
  AR446_RS09505 - 456258..456578 (+) 321 WP_394547427.1 hypothetical protein -
  AR446_RS02355 (AR446_02355) cetB 456596..457093 (+) 498 WP_002792258.1 bipartate energy taxis response protein CetB -
  AR446_RS02360 (AR446_02360) mnmG 457180..459039 (+) 1860 WP_002805032.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  AR446_RS02365 (AR446_02365) - 459039..460307 (+) 1269 WP_002777331.1 arsenic transporter -
  AR446_RS02370 (AR446_02370) petA 460397..460900 (+) 504 WP_002780564.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13169.68 Da        Isoelectric Point: 4.4002

>NTDB_id=138615 AR446_RS09500 WP_417903563.1 455831..456193(+) (pilJ) [Campylobacter coli strain HC2-48]
MGSLMDVVNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQRSTSE
ISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFFSSF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=138615 AR446_RS09500 WP_417903563.1 455831..456193(+) (pilJ) [Campylobacter coli strain HC2-48]
ATGGGTTCTTTAATGGATGTTGTAAATTCGAGCAAGGAGACAGTACAAACTTTTGTGGCTAATTCACAAAATATCACTTC
AGTGGTTGAAGTAATACGCGATATAGCCGATCAAACCAATCTTCTAGCTTTAAATGCCGCTATTGAAGCTGCGCGTGCAG
GAGAGCATGGTAGAGGATTTGCTGTTGTGGCTGATGAGGTTAGAAAATTAGCAGAAAGGACTCAAAGATCTACAAGTGAA
ATTTCTATTGCAATTCAGACTATGCAACAAGATTTTGTAAATATCCAAAGTGGCAGTGAGCAAGTTTTTAACATTGTTAG
TGAATCTGAAGAAAGAATTAATAAATTTTTCTCAAGCTTTTAA

Domains

Predicted by InterProScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(8-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

42.857

93.333

0.4