Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AR446_RS02310 Genome accession   NZ_CP013034
Coordinates   446705..447199 (-) Length   164 a.a.
NCBI ID   WP_002784381.1    Uniprot ID   -
Organism   Campylobacter coli strain HC2-48     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 441705..452199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR446_RS02295 (AR446_02295) metE 442326..444590 (-) 2265 WP_002781301.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AR446_RS02300 (AR446_02300) - 444613..445383 (-) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AR446_RS02305 (AR446_02305) - 445397..446389 (-) 993 WP_002781305.1 isopenicillin N synthase family dioxygenase -
  AR446_RS02310 (AR446_02310) luxS 446705..447199 (-) 495 WP_002784381.1 S-ribosylhomocysteine lyase Regulator
  AR446_RS02315 (AR446_02315) gatB 447314..448732 (+) 1419 WP_002777351.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  AR446_RS02320 (AR446_02320) - 448732..449631 (+) 900 WP_002777349.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AR446_RS02325 (AR446_02325) - 449640..450821 (+) 1182 WP_002777347.1 metal-dependent hydrolase -
  AR446_RS02330 (AR446_02330) - 450824..452006 (-) 1183 Protein_453 inorganic phosphate transporter -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18313.22 Da        Isoelectric Point: 5.0135

>NTDB_id=138587 AR446_RS02310 WP_002784381.1 446705..447199(-) (luxS) [Campylobacter coli strain HC2-48]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGIPDEKSVAKAWEAAMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGVMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=138587 AR446_RS02310 WP_002784381.1 446705..447199(-) (luxS) [Campylobacter coli strain HC2-48]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCATACCTGATGAAAAAAGTGTGGCCAAGGCTTGGGAAGCTGC
AATGAAAGATATTTTAAATGTGAGCGATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGTGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCGTAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713

Multiple sequence alignment