Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AB847_RS22965 Genome accession   NZ_CP013031
Coordinates   4617828..4618496 (-) Length   222 a.a.
NCBI ID   WP_001321683.1    Uniprot ID   -
Organism   Escherichia coli strain H1827/12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4612828..4623496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB847_RS22935 (AB847_22905) rfaQ 4613006..4614064 (-) 1059 WP_000360401.1 lipopolysaccharide core heptosyltransferase RfaQ -
  AB847_RS22940 (AB847_22910) waaA 4614477..4615754 (+) 1278 WP_000891574.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AB847_RS22945 (AB847_22915) coaD 4615762..4616241 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  AB847_RS22950 (AB847_22920) mutM 4616280..4617089 (-) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AB847_RS22955 (AB847_22925) rpmG 4617187..4617354 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  AB847_RS22960 (AB847_22930) rpmB 4617375..4617611 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  AB847_RS22965 (AB847_22935) radC 4617828..4618496 (-) 669 WP_001321683.1 RadC family protein Machinery gene
  AB847_RS22970 (AB847_22940) coaBC 4618668..4619888 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AB847_RS22975 (AB847_22945) dut 4619866..4620324 (+) 459 WP_000976070.1 dUTP diphosphatase -
  AB847_RS22980 (AB847_22950) slmA 4620431..4621027 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  AB847_RS22985 (AB847_22955) pyrE 4621064..4621705 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  AB847_RS22990 (AB847_22960) rph 4621771..4622487 (-) 717 WP_001247089.1 ribonuclease PH -
  AB847_RS22995 (AB847_22965) yicC 4622614..4623477 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25257.41 Da        Isoelectric Point: 8.9890

>NTDB_id=138566 AB847_RS22965 WP_001321683.1 4617828..4618496(-) (radC) [Escherichia coli strain H1827/12]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGKYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=138566 AB847_RS22965 WP_001321683.1 4617828..4618496(-) (radC) [Escherichia coli strain H1827/12]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAAAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496