Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   AB847_RS19430 Genome accession   NZ_CP013031
Coordinates   3897197..3898432 (+) Length   411 a.a.
NCBI ID   WP_032205596.1    Uniprot ID   -
Organism   Escherichia coli strain H1827/12     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3892197..3903432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB847_RS19415 (AB847_19390) - 3892712..3894388 (+) 1677 WP_001331697.1 polysaccharide biosynthesis/export family protein -
  AB847_RS19420 (AB847_19395) kdsB 3894398..3895138 (+) 741 WP_001596179.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB847_RS19425 (AB847_19400) - 3895135..3897162 (+) 2028 WP_032201841.1 capsular polysaccharide biosynthesis protein -
  AB847_RS19430 (AB847_19405) kpsS 3897197..3898432 (+) 1236 WP_032205596.1 capsule biosynthesis protein Regulator
  AB847_RS19435 (AB847_19410) - 3898593..3899729 (-) 1137 WP_021516454.1 hypothetical protein -
  AB847_RS19440 (AB847_19415) - 3899746..3901119 (-) 1374 WP_021516455.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 49025.52 Da        Isoelectric Point: 10.0138

>NTDB_id=138550 AB847_RS19430 WP_032205596.1 3897197..3898432(+) (kpsS) [Escherichia coli strain H1827/12]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVRTQINGVYYGDRCFEHDIKV
DKDSWSLTRQV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=138550 AB847_RS19430 WP_032205596.1 3897197..3898432(+) (kpsS) [Escherichia coli strain H1827/12]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTTAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGTCGTAACGCTGTGAATGTAGTATTCAACGGCGGGGATCGTTTTTACTGCC
GTCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCTCGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AAGTATTGCCGCGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGAGATTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCAAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTGTTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCGCTGATTCACAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAGGACGCAGATTAATGGGGTTTATTATGGTGATAGATGTTTTGAACATGATATTAAGGTG
GATAAGGATTCTTGGAGTCTTACACGTCAAGTTTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.898

95.134

0.38