Detailed information NTG0138546

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB847_RS18265
• Genome accession: NZ_CP013031
• Coordinates: 3645325..3646317 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain H1827/12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3640325..3651317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB847_RS18245 (AB847_18230)	otnK	3641100..3642362 (+)	1263	WP_000590386.1	3-oxo-tetronate kinase	-
AB847_RS18250 (AB847_18235)	ygbL	3642359..3642997 (+)	639	WP_001278994.1	aldolase	-
AB847_RS18255 (AB847_18240)	ygbM	3643002..3643778 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
AB847_RS18260 (AB847_18245)	ygbN	3643867..3645231 (+)	1365	WP_065273953.1	GntP family transporter	-
AB847_RS18265 (AB847_18250)	rpoS	3645325..3646317 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AB847_RS18270 (AB847_18255)	nlpD	3646380..3647474 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AB847_RS18275 (AB847_18260)	pcm	3647659..3648285 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AB847_RS18280 (AB847_18265)	surE	3648279..3649040 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB847_RS18285 (AB847_18270)	truD	3649021..3650070 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AB847_RS18290 (AB847_18275)	ispF	3650067..3650546 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB847_RS18295 (AB847_18280)	ispD	3650546..3651256 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=138546 AB847_RS18265 WP_000081550.1 3645325..3646317(-) (rpoS) [Escherichia coli strain H1827/12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=138546 AB847_RS18265 WP_000081550.1 3645325..3646317(-) (rpoS) [Escherichia coli strain H1827/12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715