Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AB847_RS17985 Genome accession   NZ_CP013031
Coordinates   3592982..3593497 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain H1827/12     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3587982..3598497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB847_RS17960 (AB847_17945) ygaZ 3588381..3589118 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  AB847_RS17965 (AB847_17950) ygaH 3589108..3589443 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AB847_RS17970 (AB847_17955) emrR 3589534..3590064 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AB847_RS17975 (AB847_17960) emrA 3590191..3591363 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AB847_RS17980 (AB847_17965) emrB 3591380..3592918 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AB847_RS17985 (AB847_17970) luxS 3592982..3593497 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AB847_RS17990 (AB847_17975) gshA 3593647..3595203 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AB847_RS17995 (AB847_17980) yqaA 3595276..3595704 (-) 429 WP_001287454.1 YqaA family protein -
  AB847_RS18000 (AB847_17985) yqaB 3595701..3596267 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AB847_RS18030 (AB847_18015) csrA 3597725..3597910 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=138543 AB847_RS17985 WP_001130211.1 3592982..3593497(-) (luxS) [Escherichia coli strain H1827/12]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=138543 AB847_RS17985 WP_001130211.1 3592982..3593497(-) (luxS) [Escherichia coli strain H1827/12]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment