Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RC34_RS04990 Genome accession   NZ_CP010500
Coordinates   929818..930849 (-) Length   343 a.a.
NCBI ID   WP_002932074.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC528     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 924818..935849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC34_RS04970 (RC34_04960) - 926805..927653 (-) 849 WP_002869692.1 DNA ligase -
  RC34_RS04975 (RC34_04965) cgpA 927653..928315 (-) 663 WP_002866836.1 glycoprotein CgpA -
  RC34_RS04980 (RC34_04970) - 928305..928508 (-) 204 WP_002839177.1 hypothetical protein -
  RC34_RS04985 (RC34_04975) eno 928574..929818 (-) 1245 WP_002856489.1 phosphopyruvate hydratase -
  RC34_RS04990 (RC34_04980) recA 929818..930849 (-) 1032 WP_002932074.1 recombinase RecA Machinery gene
  RC34_RS04995 (RC34_04985) - 930955..931815 (+) 861 WP_002932077.1 menaquinone biosynthesis family protein -
  RC34_RS05000 (RC34_04990) fliQ 931827..932096 (+) 270 WP_002932080.1 flagellar biosynthesis protein FliQ -
  RC34_RS05005 (RC34_04995) murB 932093..932869 (+) 777 WP_002932082.1 UDP-N-acetylmuramate dehydrogenase -
  RC34_RS05010 (RC34_05000) - 932894..933664 (-) 771 WP_072225822.1 hypothetical protein -
  RC34_RS05015 (RC34_05005) cysQ 933704..934468 (-) 765 WP_002932084.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  RC34_RS05020 (RC34_05010) gltA 934549..935817 (-) 1269 WP_002851494.1 citrate synthase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37031.24 Da        Isoelectric Point: 4.9784

>NTDB_id=138543 RC34_RS04990 WP_002932074.1 929818..930849(-) (recA) [Campylobacter jejuni strain CJ677CC528]
MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEIT
KAIQNSIGIEGMISGSEDDEGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=138543 RC34_RS04990 WP_002932074.1 929818..930849(-) (recA) [Campylobacter jejuni strain CJ677CC528]
ATGGATGATAATAAAAGAAAATCTCTAGACGCTGCCCTAAAAAGTTTAGATAAAACCTTTGGAAAAGGCACTATCTTAAG
ACTAGGGGATAAAGAAGTCGAGCAAATCGATAGCATAGGCACAGGTTCAGTTGGACTTGATCTTGCTTTAGGTATAGGCG
GTGTTCCAAAAGGAAGAATTATAGAAATTTATGGGCCTGAAAGTTCAGGTAAAACCACTCTAACTCTACACATTATCGCA
GAATGCCAAAAAGCAGGTGGAGTTTGTGCTTTTATCGATGCAGAACACGCTCTTGATGTAAAATATGCTAAAAATTTGGG
TGTAAATACAGATGATTTGTATGTTTCTCAGCCTGATTTTGGAGAACAAGCCTTAGAAATTGTAGAAACTATAGCAAGAA
GTGGTGCAGTAGATCTTATCGTAGTAGATAGCGTTGCAGCACTTACCCCAAAAGCAGAAATTGAAGGCGATATGGGCGAT
CAACATGTAGGACTTCAAGCAAGACTTATGTCTCAAGCTCTAAGAAAACTTACAGGTATAGTTCATAAAATGAATACCAC
AGTAATTTTCATCAACCAAATTCGTATGAAAATCGGTGCTATGGGTTATGGTACTCCTGAAACCACAACAGGTGGAAATG
CATTAAAATTTTATGCTTCTGTGCGTTTAGATGTTAGAAAAGTAGCAACCTTAAAACAAAACGAAGAACCTATAGGAAAC
CGCGTTAAAGTAAAAGTAGTTAAAAATAAAGTTGCTCCTCCATTCAGACAAGCTGAATTTGATGTGATGTTTGGAGAGGG
TTTAAGTCGTGAAGGTGAATTGATCGATTATGGTGTAAAACTTGATATCGTAGATAAAAGTGGTGCGTGGTTTTCTTATA
AAGATAAAAAACTTGGACAAGGTAGAGAAAACTCAAAAGCTTTCTTAAAAGAAAACCCTGAAATTGCAGATGAAATCACA
AAAGCAATTCAAAATTCTATAGGAATAGAAGGTATGATCAGCGGTAGCGAAGATGACGAAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.708

100

0.997
  recA Helicobacter pylori 26695

79.573

95.627

0.761
  recA Helicobacter pylori strain NCTC11637

79.268

95.627

0.758
  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647
  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647
  recA Neisseria gonorrhoeae strain FA1090

65.103

99.417

0.647
  recA Acinetobacter baylyi ADP1

62.974

100

0.63
  recA Acinetobacter baumannii D1279779

61.808

100

0.618
  recA Glaesserella parasuis strain SC1401

65.031

95.044

0.618
  recA Pseudomonas stutzeri DSM 10701

65.432

94.461

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

96.793

0.618
  recA Ralstonia pseudosolanacearum GMI1000

63.72

95.627

0.609
  recA Vibrio cholerae strain A1552

64.506

94.461

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.506

94.461

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

95.335

0.609
  recA Streptococcus mitis SK321

57.647

99.125

0.571
  recA Streptococcus pneumoniae Rx1

59.574

95.918

0.571
  recA Streptococcus pneumoniae D39

59.574

95.918

0.571
  recA Streptococcus pneumoniae R6

59.574

95.918

0.571
  recA Streptococcus pneumoniae TIGR4

59.574

95.918

0.571
  recA Streptococcus mitis NCTC 12261

58.967

95.918

0.566
  recA Streptococcus pyogenes NZ131

58.788

96.21

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

59.021

95.335

0.563
  recA Streptococcus mutans UA159

57.704

96.501

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.447

95.918

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.025

94.461

0.548

Multiple sequence alignment