Detailed information NTG0138498

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AB847_RS01180
• Genome accession: NZ_CP013031
• Coordinates: 236208..237233 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain H1827/12
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 231208..242233

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB847_RS01150 (AB847_01150)	zapB	231292..231537 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
AB847_RS01155 (AB847_01155)	rraA	231622..232107 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AB847_RS01160 (AB847_01160)	menA	232200..233126 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AB847_RS01165 (AB847_01165)	hslU	233193..234524 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
AB847_RS01170 (AB847_01170)	hslV	234534..235064 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AB847_RS01175 (AB847_01175)	ftsN	235157..236116 (-)	960	WP_000068828.1	cell division protein FtsN	-
AB847_RS01180 (AB847_01180)	cytR	236208..237233 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AB847_RS01185 (AB847_01185)	priA	237389..239587 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
AB847_RS01190 (AB847_01190)	rpmE	239790..240002 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
AB847_RS01195 (AB847_01195)	-	240057..240680 (-)	624	WP_000720774.1	TIGR02117 family protein	-
AB847_RS01200 (AB847_01200)	yiiX	240687..241295 (-)	609	WP_000797341.1	YiiX family permuted papain-like enzyme	-
AB847_RS01205 (AB847_01205)	metJ	241479..241796 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=138498 AB847_RS01180 WP_000644904.1 236208..237233(-) (cytR) [Escherichia coli strain H1827/12]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=138498 AB847_RS01180 WP_000644904.1 236208..237233(-) (cytR) [Escherichia coli strain H1827/12]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628