Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AKK22_RS19900 Genome accession   NZ_CP013029
Coordinates   3688694..3689209 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2012C-4227     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3683694..3694209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKK22_RS19875 (AKK22_19390) ygaZ 3684093..3684830 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  AKK22_RS19880 (AKK22_19395) ygaH 3684820..3685155 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AKK22_RS19885 (AKK22_19400) emrR 3685246..3685776 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AKK22_RS19890 (AKK22_19405) emrA 3685903..3687075 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AKK22_RS19895 (AKK22_19410) emrB 3687092..3688630 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AKK22_RS19900 (AKK22_19415) luxS 3688694..3689209 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AKK22_RS19905 (AKK22_19420) gshA 3689360..3690916 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AKK22_RS19910 (AKK22_19425) yqaA 3690989..3691417 (-) 429 WP_001287457.1 YqaA family protein -
  AKK22_RS19915 (AKK22_19430) yqaB 3691414..3691980 (-) 567 WP_032207565.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AKK22_RS19945 (AKK22_19460) csrA 3693438..3693623 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=138453 AKK22_RS19900 WP_001130211.1 3688694..3689209(-) (luxS) [Escherichia coli strain 2012C-4227]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=138453 AKK22_RS19900 WP_001130211.1 3688694..3689209(-) (luxS) [Escherichia coli strain 2012C-4227]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment