Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | RC03_RS05805 | Genome accession | NZ_CP010496 |
| Coordinates | 1087714..1088664 (+) | Length | 316 a.a. |
| NCBI ID | WP_002933188.1 | Uniprot ID | A0A5T1IXP3 |
| Organism | Campylobacter jejuni strain CJ677CC032 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1067387..1103582 | 1087714..1088664 | within | 0 |
Gene organization within MGE regions
Location: 1067387..1103582
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RC03_RS05695 (RC03_05695) | pglI | 1067387..1068316 (-) | 930 | WP_002932672.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| RC03_RS05700 (RC03_05700) | pglH | 1068309..1069388 (-) | 1080 | WP_072225867.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| RC03_RS05705 (RC03_05705) | pglK | 1069385..1071079 (-) | 1695 | WP_059110942.1 | ABC-type lipopolysaccharide transporter PglK | - |
| RC03_RS05710 (RC03_05710) | galE | 1071073..1072059 (-) | 987 | WP_002891881.1 | UDP-glucose 4-epimerase GalE | - |
| RC03_RS05715 (RC03_05715) | - | 1072118..1072912 (-) | 795 | WP_002932659.1 | 3'-5' exonuclease | - |
| RC03_RS05720 (RC03_05720) | waaC | 1072979..1074007 (+) | 1029 | WP_002932658.1 | lipopolysaccharide heptosyltransferase I | - |
| RC03_RS05725 (RC03_05725) | htrB | 1073997..1074875 (+) | 879 | WP_002932656.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| RC03_RS05730 (RC03_05730) | - | 1074872..1075573 (+) | 702 | WP_002932655.1 | glycosyltransferase family 2 protein | - |
| RC03_RS05735 (RC03_05735) | rfbA | 1075584..1076462 (+) | 879 | WP_002932653.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| RC03_RS05740 (RC03_05740) | rfbB | 1076462..1077493 (+) | 1032 | WP_002932647.1 | dTDP-glucose 4,6-dehydratase | - |
| RC03_RS05745 (RC03_05745) | wlaRA | 1077496..1077927 (+) | 432 | WP_079460535.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| RC03_RS05750 (RC03_05750) | wlaRB | 1077935..1078339 (+) | 405 | WP_002932644.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| RC03_RS05755 (RC03_05755) | - | 1078329..1078763 (+) | 435 | WP_032603537.1 | acyltransferase | - |
| RC03_RS05760 (RC03_05760) | wlaRD | 1078793..1079611 (+) | 819 | WP_002866154.1 | class E lipooligosaccharide biosynthesis sugar-formyltransferase WlaRD | - |
| RC03_RS05765 (RC03_05765) | - | 1079630..1080706 (+) | 1077 | WP_002932642.1 | glycosyltransferase family A protein | - |
| RC03_RS05770 (RC03_05770) | wlaRG | 1080703..1081788 (+) | 1086 | WP_002932641.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| RC03_RS05775 (RC03_05775) | - | 1081822..1083075 (-) | 1254 | WP_002932640.1 | DUF2972 domain-containing protein | - |
| RC03_RS05780 (RC03_05780) | - | 1083072..1084085 (-) | 1014 | WP_002932637.1 | hypothetical protein | - |
| RC03_RS05785 (RC03_05785) | - | 1084156..1084929 (+) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| RC03_RS05790 (RC03_05790) | wlaTB | 1084922..1085878 (+) | 957 | WP_002869613.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| RC03_RS05795 (RC03_05795) | wlaTC | 1085875..1086834 (+) | 960 | WP_048818625.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| RC03_RS05800 (RC03_05800) | - | 1086837..1087655 (-) | 819 | WP_002933186.1 | glycosyltransferase family 2 protein | - |
| RC03_RS05805 (RC03_05805) | waaF | 1087714..1088664 (+) | 951 | WP_002933188.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| RC03_RS05810 (RC03_05810) | - | 1088716..1090215 (+) | 1500 | WP_002933196.1 | MBOAT family O-acyltransferase | - |
| RC03_RS05815 (RC03_05815) | - | 1090363..1091340 (+) | 978 | WP_002933198.1 | hypothetical protein | - |
| RC03_RS05820 (RC03_05820) | gmhA | 1091344..1091904 (-) | 561 | WP_059110944.1 | D-sedoheptulose 7-phosphate isomerase | - |
| RC03_RS05825 (RC03_05825) | rfaE1 | 1091901..1093286 (-) | 1386 | WP_002933204.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| RC03_RS05830 (RC03_05830) | rfaD | 1093279..1094232 (-) | 954 | WP_002933207.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| RC03_RS05835 (RC03_05835) | gmhB | 1094229..1094792 (-) | 564 | WP_002933210.1 | HAD family hydrolase | - |
| RC03_RS05840 (RC03_05840) | - | 1094873..1095175 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| RC03_RS05845 (RC03_05845) | ccoS | 1095199..1095405 (-) | 207 | WP_002933213.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| RC03_RS05850 (RC03_05850) | - | 1095402..1097759 (-) | 2358 | WP_072225866.1 | heavy metal translocating P-type ATPase | - |
| RC03_RS05855 (RC03_05855) | rho | 1097868..1099166 (+) | 1299 | WP_002853705.1 | transcription termination factor Rho | - |
| RC03_RS05860 (RC03_05860) | dnaX | 1099170..1100699 (+) | 1530 | WP_002933222.1 | DNA polymerase III subunit gamma/tau | - |
| RC03_RS05865 (RC03_05865) | - | 1100696..1101217 (-) | 522 | WP_059110945.1 | DUF2165 family protein | - |
| RC03_RS05870 (RC03_05870) | copA | 1101289..1103388 (-) | 2100 | WP_059110946.1 | copper-translocating P-type ATPase CopA | - |
| RC03_RS05875 (RC03_05875) | - | 1103388..1103582 (-) | 195 | WP_002933227.1 | cation transporter | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36201.62 Da Isoelectric Point: 10.1851
>NTDB_id=138442 RC03_RS05805 WP_002933188.1 1087714..1088664(+) (waaF) [Campylobacter jejuni strain CJ677CC032]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLHKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPERVIEEIKKLSTP
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLHKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPERVIEEIKKLSTP
Nucleotide
Download Length: 951 bp
>NTDB_id=138442 RC03_RS05805 WP_002933188.1 1087714..1088664(+) (waaF) [Campylobacter jejuni strain CJ677CC032]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTACAAACAAGCCCTATCTTTACACAAAGAACTTGGTAAAATTGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATATCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGTTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTTATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAACGAAAACGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGTATGAAAGATTTAAAGCCTGAAAGAGTGATAGAAGAAATTAAAAAATTAAGCACCCCATAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTACAAACAAGCCCTATCTTTACACAAAGAACTTGGTAAAATTGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATATCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGTTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTTATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAACGAAAACGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGTATGAAAGATTTAAAGCCTGAAAGAGTGATAGAAGAAATTAAAAAATTAAGCACCCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
95.208 |
99.051 |
0.943 |