Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   RC03_RS01380 Genome accession   NZ_CP010496
Coordinates   240546..240983 (+) Length   145 a.a.
NCBI ID   WP_059110889.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC032     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 235546..245983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC03_RS01360 (RC03_01365) kdpD 236034..237965 (+) 1932 WP_002932500.1 sensor histidine kinase KdpD -
  RC03_RS01365 (RC03_01370) uvrB 237960..239933 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB -
  RC03_RS01370 (RC03_01375) - 240087..240317 (+) 231 WP_002852327.1 hypothetical protein -
  RC03_RS01375 (RC03_01380) - 240307..240549 (+) 243 WP_002854947.1 hypothetical protein -
  RC03_RS01380 (RC03_01385) Cj0683 240546..240983 (+) 438 WP_059110889.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC03_RS01385 (RC03_01390) priA 240965..242818 (+) 1854 WP_002932503.1 primosomal protein N' -
  RC03_RS01390 (RC03_01395) - 242811..243074 (-) 264 Protein_276 CTP:phosphoglutamine cytidylyltransferase -
  RC03_RS01395 (RC03_01400) - 243133..243762 (+) 630 WP_002934459.1 LexA family transcriptional regulator -
  RC03_RS01400 (RC03_01405) - 243843..244163 (+) 321 WP_002891469.1 hypothetical protein -
  RC03_RS09165 - 244173..244322 (+) 150 WP_194963623.1 hypothetical protein -
  RC03_RS01405 (RC03_01410) - 244328..244591 (+) 264 WP_059111092.1 hypothetical protein -
  RC03_RS01410 (RC03_01415) - 244588..245139 (-) 552 WP_002801718.1 ImmA/IrrE family metallo-endopeptidase -
  RC03_RS09170 - 245136..245309 (-) 174 WP_002801716.1 hypothetical protein -
  RC03_RS09075 - 245577..245744 (-) 168 Protein_283 DNA adenine methylase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16766.70 Da        Isoelectric Point: 6.9036

>NTDB_id=138433 RC03_RS01380 WP_059110889.1 240546..240983(+) (Cj0683) [Campylobacter jejuni strain CJ677CC032]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLENLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=138433 RC03_RS01380 WP_059110889.1 240546..240983(+) (Cj0683) [Campylobacter jejuni strain CJ677CC032]
ATGAATAAAGCTTTTACTTTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTGAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment