Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MJ49_RS21605 Genome accession   NZ_CP013025
Coordinates   4216017..4216493 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain 2009C-3133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4211017..4221493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ49_RS21560 (MJ49_20820) sbmC 4211510..4211983 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  MJ49_RS21565 (MJ49_20825) yeeA 4212181..4213239 (+) 1059 WP_001200905.1 FUSC family protein -
  MJ49_RS21570 (MJ49_20830) tmaR 4213411..4213740 (+) 330 WP_000450409.1 DUF496 family protein -
  MJ49_RS21575 (MJ49_20835) - 4213841..4214023 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  MJ49_RS29630 - 4214086..4214223 (+) 138 Protein_3987 transposase domain-containing protein -
  MJ49_RS32630 (MJ49_20840) - 4214512..4214604 (-) 93 Protein_3988 DUF957 domain-containing protein -
  MJ49_RS21585 (MJ49_20845) yeeW 4214638..4214832 (-) 195 WP_000988599.1 DUF5983 family protein -
  MJ49_RS21590 (MJ49_20850) cbtA 4214829..4215202 (-) 374 Protein_3990 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  MJ49_RS21595 (MJ49_20855) cbeA 4215291..4215659 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  MJ49_RS21600 (MJ49_20860) yeeT 4215733..4215954 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  MJ49_RS21605 (MJ49_20865) radC 4216017..4216493 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  MJ49_RS21610 (MJ49_20870) - 4216509..4216988 (-) 480 WP_060565114.1 antirestriction protein -
  MJ49_RS21615 (MJ49_20875) - 4217070..4217891 (-) 822 WP_032285347.1 DUF932 domain-containing protein -
  MJ49_RS21620 (MJ49_20880) - 4218112..4218522 (-) 411 WP_000846713.1 hypothetical protein -
  MJ49_RS21625 (MJ49_20885) - 4218538..4219220 (-) 683 Protein_3997 hypothetical protein -
  MJ49_RS21630 (MJ49_20890) - 4219356..4220426 (-) 1071 WP_047340774.1 patatin-like phospholipase family protein -
  MJ49_RS21635 (MJ49_20895) - 4220423..4221328 (-) 906 WP_047340773.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=138402 MJ49_RS21605 WP_001186774.1 4216017..4216493(-) (radC) [Escherichia coli strain 2009C-3133]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=138402 MJ49_RS21605 WP_001186774.1 4216017..4216493(-) (radC) [Escherichia coli strain 2009C-3133]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399