Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MJ49_RS16360 Genome accession   NZ_CP013025
Coordinates   3103009..3103485 (-) Length   158 a.a.
NCBI ID   WP_001186724.1    Uniprot ID   -
Organism   Escherichia coli strain 2009C-3133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3098009..3108485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ49_RS16315 (MJ49_15570) gspL 3098368..3099546 (+) 1179 WP_000097200.1 type II secretion system protein GspL -
  MJ49_RS16320 (MJ49_15575) yghD 3099548..3100084 (+) 537 WP_000942807.1 GspM family type II secretion system protein YghD -
  MJ49_RS16325 (MJ49_15580) - 3100364..3100933 (-) 570 WP_001290247.1 DUF4942 domain-containing protein -
  MJ49_RS16330 (MJ49_15585) - 3101030..3101227 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  MJ49_RS16335 (MJ49_15590) - 3101239..3101727 (-) 489 WP_000777541.1 DUF5983 family protein -
  MJ49_RS16340 (MJ49_15595) - 3101724..3102098 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  MJ49_RS16345 (MJ49_15600) cbeA 3102188..3102556 (-) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  MJ49_RS16355 (MJ49_15610) - 3102719..3102940 (-) 222 WP_001405861.1 DUF987 domain-containing protein -
  MJ49_RS16360 (MJ49_15615) radC 3103009..3103485 (-) 477 WP_001186724.1 DNA repair protein RadC Machinery gene
  MJ49_RS16365 (MJ49_15620) - 3103501..3103980 (-) 480 WP_000860065.1 antirestriction protein -
  MJ49_RS16370 (MJ49_15625) - 3104062..3104880 (-) 819 WP_001234631.1 DUF932 domain-containing protein -
  MJ49_RS29290 (MJ49_15630) - 3104979..3105212 (-) 234 WP_001278287.1 DUF905 family protein -
  MJ49_RS16375 (MJ49_15635) - 3105218..3105895 (-) 678 WP_001097305.1 hypothetical protein -
  MJ49_RS16380 (MJ49_15640) - 3106043..3106723 (-) 681 WP_001593697.1 YafY family protein -
  MJ49_RS16390 (MJ49_15650) - 3106926..3107810 (-) 885 WP_001116802.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17674.35 Da        Isoelectric Point: 7.2020

>NTDB_id=138384 MJ49_RS16360 WP_001186724.1 3103009..3103485(-) (radC) [Escherichia coli strain 2009C-3133]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=138384 MJ49_RS16360 WP_001186724.1 3103009..3103485(-) (radC) [Escherichia coli strain 2009C-3133]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCAGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment