Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MJ49_RS12210 Genome accession   NZ_CP013025
Coordinates   2284853..2285329 (-) Length   158 a.a.
NCBI ID   WP_001366855.1    Uniprot ID   -
Organism   Escherichia coli strain 2009C-3133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2279853..2290329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ49_RS12165 (MJ49_11440) yicL 2279869..2280792 (-) 924 WP_000535959.1 carboxylate/amino acid/amine transporter -
  MJ49_RS12170 (MJ49_11445) - 2280959..2281456 (-) 498 WP_000509808.1 hypothetical protein -
  MJ49_RS12180 (MJ49_11455) - 2282052..2282894 (-) 843 WP_000036706.1 DUF4942 domain-containing protein -
  MJ49_RS12185 (MJ49_11460) - 2282991..2283188 (-) 198 WP_000839266.1 DUF957 domain-containing protein -
  MJ49_RS12190 (MJ49_11465) - 2283206..2283694 (-) 489 WP_000761680.1 DUF5983 family protein -
  MJ49_RS12195 (MJ49_11470) - 2283691..2284068 (-) 378 WP_000854735.1 TA system toxin CbtA family protein -
  MJ49_RS12200 (MJ49_11475) - 2284115..2284489 (-) 375 WP_001285415.1 type IV toxin-antitoxin system YeeU family antitoxin -
  MJ49_RS12205 (MJ49_11480) - 2284569..2284790 (-) 222 WP_000692309.1 DUF987 domain-containing protein -
  MJ49_RS12210 (MJ49_11485) radC 2284853..2285329 (-) 477 WP_001366855.1 RadC family protein Machinery gene
  MJ49_RS12215 (MJ49_11490) - 2285345..2285824 (-) 480 WP_042630954.1 antirestriction protein -
  MJ49_RS12220 (MJ49_11495) - 2285906..2286724 (-) 819 WP_001175149.1 DUF932 domain-containing protein -
  MJ49_RS12225 (MJ49_11500) - 2286814..2287047 (-) 234 WP_001278287.1 DUF905 family protein -
  MJ49_RS12230 (MJ49_11505) - 2287053..2287730 (-) 678 WP_001097301.1 hypothetical protein -
  MJ49_RS12235 (MJ49_11510) - 2287878..2288558 (-) 681 WP_001282919.1 YafY family protein -
  MJ49_RS12245 (MJ49_11520) - 2288761..2289645 (-) 885 WP_000010402.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17625.24 Da        Isoelectric Point: 7.2517

>NTDB_id=138366 MJ49_RS12210 WP_001366855.1 2284853..2285329(-) (radC) [Escherichia coli strain 2009C-3133]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=138366 MJ49_RS12210 WP_001366855.1 2284853..2285329(-) (radC) [Escherichia coli strain 2009C-3133]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAGCCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACAGAAGTTCATCCCCGGGAGGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGGCTTATCACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392