Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | RC37_RS05810 | Genome accession | NZ_CP010492 |
| Coordinates | 1087727..1088677 (+) | Length | 316 a.a. |
| NCBI ID | WP_002933188.1 | Uniprot ID | A0A5T1IXP3 |
| Organism | Campylobacter jejuni strain CJ677CC531 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1067401..1103595 | 1087727..1088677 | within | 0 |
Gene organization within MGE regions
Location: 1067401..1103595
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RC37_RS05700 (RC37_05695) | pglI | 1067401..1068330 (-) | 930 | WP_002932672.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| RC37_RS05705 (RC37_05700) | pglH | 1068323..1069402 (-) | 1080 | WP_072225867.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| RC37_RS05710 (RC37_05705) | pglK | 1069399..1071093 (-) | 1695 | WP_002932660.1 | ABC-type lipopolysaccharide transporter PglK | - |
| RC37_RS05715 (RC37_05710) | galE | 1071087..1072073 (-) | 987 | WP_002891881.1 | UDP-glucose 4-epimerase GalE | - |
| RC37_RS05720 (RC37_05715) | - | 1072132..1072926 (-) | 795 | WP_002932659.1 | 3'-5' exonuclease | - |
| RC37_RS05725 (RC37_05720) | waaC | 1072993..1074021 (+) | 1029 | WP_002932658.1 | lipopolysaccharide heptosyltransferase I | - |
| RC37_RS05730 (RC37_05725) | htrB | 1074011..1074889 (+) | 879 | WP_002932656.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| RC37_RS05735 (RC37_05730) | - | 1074886..1075587 (+) | 702 | WP_002932655.1 | glycosyltransferase family 2 protein | - |
| RC37_RS05740 (RC37_05735) | rfbA | 1075598..1076476 (+) | 879 | WP_002932653.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| RC37_RS05745 (RC37_05740) | rfbB | 1076476..1077507 (+) | 1032 | WP_002932647.1 | dTDP-glucose 4,6-dehydratase | - |
| RC37_RS05750 (RC37_05745) | wlaRA | 1077510..1077941 (+) | 432 | WP_079460535.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| RC37_RS05755 (RC37_05750) | wlaRB | 1077949..1078353 (+) | 405 | WP_002932644.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| RC37_RS05760 (RC37_05755) | - | 1078343..1078813 (+) | 471 | WP_002932643.1 | acyltransferase | - |
| RC37_RS05765 (RC37_05760) | wlaRD | 1078806..1079624 (+) | 819 | WP_002866154.1 | class E lipooligosaccharide biosynthesis sugar-formyltransferase WlaRD | - |
| RC37_RS05770 (RC37_05765) | - | 1079643..1080719 (+) | 1077 | WP_002932642.1 | glycosyltransferase family A protein | - |
| RC37_RS05775 (RC37_05770) | wlaRG | 1080716..1081801 (+) | 1086 | WP_002932641.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| RC37_RS05780 (RC37_05775) | - | 1081835..1083088 (-) | 1254 | WP_002932640.1 | DUF2972 domain-containing protein | - |
| RC37_RS05785 (RC37_05780) | - | 1083085..1084098 (-) | 1014 | WP_002932637.1 | hypothetical protein | - |
| RC37_RS05790 (RC37_05785) | - | 1084169..1084942 (+) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| RC37_RS05795 (RC37_05790) | wlaTB | 1084935..1085891 (+) | 957 | WP_002869613.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| RC37_RS05800 (RC37_05795) | wlaTC | 1085888..1086847 (+) | 960 | WP_048818625.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| RC37_RS05805 (RC37_05800) | - | 1086850..1087668 (-) | 819 | WP_002933186.1 | glycosyltransferase family 2 protein | - |
| RC37_RS05810 (RC37_05805) | waaF | 1087727..1088677 (+) | 951 | WP_002933188.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| RC37_RS05815 (RC37_05810) | - | 1088729..1090228 (+) | 1500 | WP_002933196.1 | MBOAT family O-acyltransferase | - |
| RC37_RS05820 (RC37_05815) | - | 1090376..1091353 (+) | 978 | WP_002933198.1 | hypothetical protein | - |
| RC37_RS05825 (RC37_05820) | gmhA | 1091357..1091917 (-) | 561 | WP_002933201.1 | D-sedoheptulose 7-phosphate isomerase | - |
| RC37_RS05830 (RC37_05825) | rfaE1 | 1091914..1093299 (-) | 1386 | WP_002933204.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| RC37_RS05835 (RC37_05830) | rfaD | 1093292..1094245 (-) | 954 | WP_002933207.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| RC37_RS05840 (RC37_05835) | gmhB | 1094242..1094805 (-) | 564 | WP_002933210.1 | HAD family hydrolase | - |
| RC37_RS05845 (RC37_05840) | - | 1094886..1095188 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| RC37_RS05850 (RC37_05845) | ccoS | 1095212..1095418 (-) | 207 | WP_002933213.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| RC37_RS05855 (RC37_05850) | - | 1095415..1097772 (-) | 2358 | WP_072225866.1 | heavy metal translocating P-type ATPase | - |
| RC37_RS05860 (RC37_05855) | rho | 1097881..1099179 (+) | 1299 | WP_002853705.1 | transcription termination factor Rho | - |
| RC37_RS05865 (RC37_05860) | dnaX | 1099183..1100712 (+) | 1530 | WP_002933222.1 | DNA polymerase III subunit gamma/tau | - |
| RC37_RS05870 (RC37_05865) | - | 1100709..1101230 (-) | 522 | WP_002933224.1 | DUF2165 family protein | - |
| RC37_RS05875 (RC37_05870) | copA | 1101302..1103401 (-) | 2100 | WP_002933226.1 | copper-translocating P-type ATPase CopA | - |
| RC37_RS05880 (RC37_05875) | - | 1103401..1103595 (-) | 195 | WP_002933227.1 | cation transporter | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36201.62 Da Isoelectric Point: 10.1851
>NTDB_id=138335 RC37_RS05810 WP_002933188.1 1087727..1088677(+) (waaF) [Campylobacter jejuni strain CJ677CC531]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLHKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPERVIEEIKKLSTP
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLHKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPERVIEEIKKLSTP
Nucleotide
Download Length: 951 bp
>NTDB_id=138335 RC37_RS05810 WP_002933188.1 1087727..1088677(+) (waaF) [Campylobacter jejuni strain CJ677CC531]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTACAAACAAGCCCTATCTTTACACAAAGAACTTGGTAAAATTGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATATCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGTTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTTATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAACGAAAACGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGTATGAAAGATTTAAAGCCTGAAAGAGTGATAGAAGAAATTAAAAAATTAAGCACCCCATAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTACAAACAAGCCCTATCTTTACACAAAGAACTTGGTAAAATTGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATATCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGTTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTTATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAACGAAAACGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGTATGAAAGATTTAAAGCCTGAAAGAGTGATAGAAGAAATTAAAAAATTAAGCACCCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
95.208 |
99.051 |
0.943 |