Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AP033_RS03150 Genome accession   NZ_CP013013
Coordinates   707152..707778 (-) Length   208 a.a.
NCBI ID   WP_032476049.1    Uniprot ID   -
Organism   Vibrio cholerae strain Env-390     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 702152..712778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AP033_RS03130 (AP033_10620) - 703423..704718 (+) 1296 WP_000208548.1 MFS transporter -
  AP033_RS03140 (AP033_10621) - 704815..705831 (+) 1017 WP_000170557.1 nuclear transport factor 2 family protein -
  AP033_RS03145 (AP033_10623) - 706092..707102 (+) 1011 WP_000555352.1 LacI family DNA-binding transcriptional regulator -
  AP033_RS03150 (AP033_10624) vraR 707152..707778 (-) 627 WP_032476049.1 response regulator Regulator
  AP033_RS03155 (AP033_10625) narQ 707768..709456 (-) 1689 WP_001994926.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  AP033_RS03160 (AP033_10626) napF 709689..710183 (+) 495 WP_000228050.1 ferredoxin-type protein NapF -
  AP033_RS03165 (AP033_10627) - 710210..710530 (+) 321 WP_000082211.1 chaperone NapD -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23077.39 Da        Isoelectric Point: 4.4662

>NTDB_id=138320 AP033_RS03150 WP_032476049.1 707152..707778(-) (vraR) [Vibrio cholerae strain Env-390]
MSCRVLLVDDHPLMRRGINQLLSFEEEFEVVAEAGNGAEAIALAHDLQPDLILLDLNMKGMSGLDTLTALRTDECDAYVV
ILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVESYLLNREHTSNPFEALTEREMQIMSEVAK
GYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLERYANA

Nucleotide


Download         Length: 627 bp        

>NTDB_id=138320 AP033_RS03150 WP_032476049.1 707152..707778(-) (vraR) [Vibrio cholerae strain Env-390]
ATGAGTTGTAGAGTCCTTTTAGTGGATGATCACCCGCTGATGCGCCGTGGTATCAATCAACTATTGAGTTTTGAAGAAGA
ATTTGAGGTGGTTGCCGAAGCGGGGAATGGGGCTGAAGCGATTGCTCTGGCGCATGATCTACAACCGGACTTGATTCTGC
TCGATCTCAATATGAAAGGGATGTCGGGATTGGATACGCTGACTGCGCTGCGCACCGATGAGTGTGACGCTTATGTGGTG
ATCCTCACGGTTTCAGACAGCGCCGCAGATATTGAAGCATTAGTCAAAGCGGGGGCTGATGGCTATCTCCTCAAAGACAC
TGAGCCAGATCAACTGGTGGCGCTGCTTAAACAAGCCATGCAAGGCGAAAAAGCCTTTAGTGAGTCGGTCGAAAGCTACC
TTTTAAATCGCGAGCATACGAGTAATCCTTTTGAAGCACTAACGGAACGTGAAATGCAAATTATGTCAGAAGTGGCAAAG
GGTTATCGCAATCGACAAATCGCCGACCGCCTGTTTATTTCTGAATCTACCGTCAAAGTGCACATGAAAAGCTTACTGAA
AAAGCTCGATGTGCCGTCACGCACCGCCGCCACGATTCTTTATCTAGAGCGGTATGCTAATGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-200)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40

96.154

0.385

Multiple sequence alignment