Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NH62_RS00030 Genome accession   NZ_CP012997
Coordinates   5055..6059 (-) Length   334 a.a.
NCBI ID   WP_000224436.1    Uniprot ID   Q9KN33
Organism   Vibrio cholerae strain 2012Env-9     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 55..11059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH62_RS00010 (NH62_10002) glpQ 1527..2594 (+) 1068 WP_000917229.1 glycerophosphodiester phosphodiesterase -
  NH62_RS00015 (NH62_10003) - 2647..3327 (-) 681 WP_001177500.1 Crp/Fnr family transcriptional regulator -
  NH62_RS00020 (NH62_10004) - 3467..4198 (-) 732 WP_000027384.1 nucleoside phosphorylase -
  NH62_RS00025 (NH62_10005) pnuC 4195..4929 (-) 735 WP_000365209.1 nicotinamide riboside transporter PnuC -
  NH62_RS00030 (NH62_10006) cytR 5055..6059 (-) 1005 WP_000224436.1 substrate-binding domain-containing protein Regulator
  NH62_RS00035 (NH62_10007) rbsK 6070..6990 (-) 921 WP_001038373.1 ribokinase -
  NH62_RS00040 (NH62_10008) rbsB 7128..8006 (-) 879 WP_000737177.1 ribose ABC transporter substrate-binding protein RbsB -
  NH62_RS00045 (NH62_10009) rbsC 8067..9050 (-) 984 WP_000107607.1 ribose ABC transporter permease -
  NH62_RS00050 (NH62_10010) rbsA 9065..10567 (-) 1503 WP_000189455.1 ribose ABC transporter ATP-binding protein RbsA -
  NH62_RS00055 (NH62_10011) rbsD 10594..11013 (-) 420 WP_000749918.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37090.71 Da        Isoelectric Point: 7.6774

>NTDB_id=138295 NH62_RS00030 WP_000224436.1 5055..6059(-) (cytR) [Vibrio cholerae strain 2012Env-9]
MATMKDIARLAGVSTSTVSHVINKSRFVSDEIAERVNNAAQQLNYAPSALARSLKMNRTKTIGMLVTTSTNPFFGEVVKG
VERSCYHQGYNLILCNTEGDNQRMKASINTLLQKRVDGLLLMCSTLEGERLDVFDRYPDIPIVVMDWGPILFASDKIQDN
SLQGGYMAAKHLIECGHKEIGCITGPLIRHQAQMRYEGYKRALAEAGIAINPDWIVESDFECEGGYQAFEKLYQRGKLPS
ALFVSNDMMAMGVIQAASQRGLRVPDDLSLIGYDDVHIAKFMTPALTTIHQPKYRLGKAAVDTLLYRLENPDTTAQVVQL
EPTLVVRNSVRKLG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=138295 NH62_RS00030 WP_000224436.1 5055..6059(-) (cytR) [Vibrio cholerae strain 2012Env-9]
ATGGCCACCATGAAGGATATCGCTCGACTTGCTGGCGTCTCCACTTCAACCGTAAGCCATGTGATCAATAAGAGTCGTTT
TGTGAGTGATGAAATTGCTGAGCGGGTGAATAACGCCGCTCAGCAACTCAATTACGCCCCCTCCGCTCTCGCGCGTAGCC
TCAAAATGAACCGCACCAAAACCATTGGCATGTTAGTGACCACCTCGACCAACCCATTTTTTGGTGAAGTGGTAAAAGGT
GTAGAGCGAAGCTGTTATCACCAAGGCTACAACCTAATCTTGTGCAATACCGAAGGGGATAACCAACGCATGAAAGCCAG
CATCAACACCTTGCTGCAAAAGCGTGTCGATGGTTTGCTGCTGATGTGCTCAACCCTTGAGGGTGAAAGGTTGGATGTGT
TTGACCGCTATCCCGACATTCCTATTGTGGTCATGGACTGGGGCCCGATCCTGTTTGCGAGTGACAAAATTCAAGACAAC
TCACTGCAAGGTGGCTACATGGCGGCCAAGCATCTGATTGAGTGTGGGCATAAAGAGATTGGTTGTATCACAGGTCCGCT
GATTCGCCACCAAGCACAGATGCGTTATGAAGGTTACAAACGTGCGCTCGCGGAAGCGGGAATTGCCATTAATCCAGATT
GGATTGTGGAATCTGACTTCGAGTGTGAAGGCGGCTACCAAGCCTTTGAAAAACTCTATCAGCGTGGCAAATTGCCCAGT
GCTTTGTTTGTTTCCAATGACATGATGGCGATGGGCGTGATTCAAGCCGCTAGCCAACGAGGTTTGCGAGTGCCGGACGA
TCTTTCCTTGATTGGCTACGATGATGTGCATATTGCTAAATTTATGACCCCTGCTTTAACCACCATCCATCAACCCAAAT
ACCGCCTCGGCAAAGCCGCTGTGGATACCCTGCTTTATCGGTTGGAAAATCCAGACACCACTGCGCAAGTGGTACAGTTA
GAGCCGACTTTAGTGGTGCGTAATAGTGTACGAAAACTCGGCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KN33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.554

99.401

0.383
  cytR Vibrio parahaemolyticus RIMD 2210633

37.952

99.401

0.377

Multiple sequence alignment