Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   RC38_RS03165 Genome accession   NZ_CP010490
Coordinates   589153..589590 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain CJ677CC532     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 584153..594590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC38_RS03145 (RC38_03150) kdpD 584641..586572 (+) 1932 WP_002932500.1 sensor histidine kinase KdpD -
  RC38_RS03150 (RC38_03155) uvrB 586567..588540 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB -
  RC38_RS03155 (RC38_03160) - 588694..588924 (+) 231 WP_002852327.1 hypothetical protein -
  RC38_RS03160 (RC38_03165) - 588914..589156 (+) 243 WP_002854947.1 hypothetical protein -
  RC38_RS03165 (RC38_03170) Cj0683 589153..589590 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC38_RS03170 (RC38_03175) priA 589572..591425 (+) 1854 WP_002932503.1 primosomal protein N' -
  RC38_RS03175 (RC38_03180) - 591418..591561 (-) 144 Protein_624 sugar nucleotidyltransferase -
  RC38_RS08900 - 591556..591633 (-) 78 Protein_625 S24 family peptidase -
  RC38_RS03180 (RC38_03185) - 591700..593391 (-) 1692 WP_002933520.1 AAA family ATPase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=138276 RC38_RS03165 WP_002852324.1 589153..589590(+) (Cj0683) [Campylobacter jejuni strain CJ677CC532]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=138276 RC38_RS03165 WP_002852324.1 589153..589590(+) (Cj0683) [Campylobacter jejuni strain CJ677CC532]
ATGAATAAAGCTTTTACTTTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment