Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   RC21_RS07020 Genome accession   NZ_CP010488
Coordinates   1345677..1346855 (-) Length   392 a.a.
NCBI ID   WP_002932300.1    Uniprot ID   A0A5T1D2G9
Organism   Campylobacter jejuni strain CJ677CC092     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1340677..1351855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC21_RS06990 (RC21_06990) - 1341219..1341560 (+) 342 WP_002932295.1 hypothetical protein -
  RC21_RS06995 (RC21_06995) flgM 1341623..1341820 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  RC21_RS07000 (RC21_07000) - 1341862..1342296 (+) 435 WP_002779263.1 flagellar protein FlgN -
  RC21_RS07005 (RC21_07005) flgK 1342306..1344132 (+) 1827 WP_002932296.1 flagellar hook-associated protein FlgK -
  RC21_RS07010 (RC21_07010) - 1344149..1344913 (+) 765 WP_002932297.1 TIGR02757 family protein -
  RC21_RS07015 (RC21_07015) - 1344916..1345680 (+) 765 WP_002932298.1 TSUP family transporter -
  RC21_RS07020 (RC21_07020) ctsF 1345677..1346855 (-) 1179 WP_002932300.1 type II secretion system F family protein Machinery gene
  RC21_RS07025 (RC21_07025) ctsE 1346852..1348411 (-) 1560 WP_032598692.1 GspE/PulE family protein Machinery gene
  RC21_RS07030 (RC21_07030) ctsX 1348401..1348988 (-) 588 WP_002932306.1 hypothetical protein Machinery gene
  RC21_RS07035 (RC21_07035) ctsP 1348992..1349600 (-) 609 WP_002932308.1 ATP-binding protein Machinery gene
  RC21_RS07040 (RC21_07040) mshL 1349593..1351005 (-) 1413 Protein_1387 pilus (MSHA type) biogenesis protein MshL -
  RC21_RS07045 (RC21_07045) ctsR 1350983..1351294 (-) 312 WP_002932309.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 45674.31 Da        Isoelectric Point: 9.0938

>NTDB_id=138235 RC21_RS07020 WP_002932300.1 1345677..1346855(-) (ctsF) [Campylobacter jejuni strain CJ677CC092]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINF

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=138235 RC21_RS07020 WP_002932300.1 1345677..1346855(-) (ctsF) [Campylobacter jejuni strain CJ677CC092]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCCAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGCGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCAGGTATAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1D2G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.469

100

0.985

Multiple sequence alignment