Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   RB97_RS07050 Genome accession   NZ_CP010487
Coordinates   1351955..1352266 (-) Length   103 a.a.
NCBI ID   WP_002932309.1    Uniprot ID   A0A5T1CZI8
Organism   Campylobacter jejuni strain CJ677CC012     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1346955..1357266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB97_RS07030 (RB97_07020) ctsE 1347824..1349383 (-) 1560 WP_059110980.1 GspE/PulE family protein Machinery gene
  RB97_RS07035 (RB97_07025) ctsX 1349373..1349960 (-) 588 WP_002932306.1 hypothetical protein Machinery gene
  RB97_RS07040 (RB97_07030) ctsP 1349964..1350572 (-) 609 WP_002932308.1 ATP-binding protein Machinery gene
  RB97_RS07045 (RB97_07035) mshL 1350565..1351977 (-) 1413 Protein_1389 pilus (MSHA type) biogenesis protein MshL -
  RB97_RS07050 (RB97_07040) ctsR 1351955..1352266 (-) 312 WP_002932309.1 hypothetical protein Machinery gene
  RB97_RS07055 (RB97_07045) nifJ 1352290..1355850 (-) 3561 WP_002932311.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  RB97_RS07060 (RB97_07050) - 1355943..1356584 (-) 642 WP_002932313.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12431.31 Da        Isoelectric Point: 6.4656

>NTDB_id=138213 RB97_RS07050 WP_002932309.1 1351955..1352266(-) (ctsR) [Campylobacter jejuni strain CJ677CC012]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=138213 RB97_RS07050 WP_002932309.1 1351955..1352266(-) (ctsR) [Campylobacter jejuni strain CJ677CC012]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment