Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   RC20_RS01390 Genome accession   NZ_CP010485
Coordinates   241897..242334 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain CJ677CC086     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 236897..247334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC20_RS01370 (RC20_01385) kdpD 237385..239316 (+) 1932 WP_002932500.1 sensor histidine kinase KdpD -
  RC20_RS01375 (RC20_01390) uvrB 239311..241284 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB -
  RC20_RS01380 (RC20_01395) - 241438..241668 (+) 231 WP_002852327.1 hypothetical protein -
  RC20_RS01385 (RC20_01400) - 241658..241900 (+) 243 WP_002854947.1 hypothetical protein -
  RC20_RS01390 (RC20_01405) Cj0683 241897..242334 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC20_RS01395 (RC20_01410) priA 242316..244169 (+) 1854 WP_002932503.1 primosomal protein N' -
  RC20_RS01400 (RC20_01415) - 244162..244431 (-) 270 Protein_275 CTP:phosphoglutamine cytidylyltransferase -
  RC20_RS08660 - 244428..244646 (+) 219 Protein_276 S24 family peptidase -
  RC20_RS01405 (RC20_01420) - 244705..244968 (+) 264 WP_059113545.1 hypothetical protein -
  RC20_RS01410 (RC20_01425) - 244943..245215 (+) 273 WP_059111066.1 hypothetical protein -
  RC20_RS01415 (RC20_01430) - 245212..245763 (-) 552 WP_002801718.1 ImmA/IrrE family metallo-endopeptidase -
  RC20_RS08835 - 245760..245933 (-) 174 WP_002801716.1 hypothetical protein -
  RC20_RS08780 - 246201..246368 (-) 168 Protein_281 DNA adenine methylase -
  RC20_RS01420 (RC20_01435) - 246475..246795 (+) 321 WP_072225835.1 S24 family peptidase -
  RC20_RS08840 (RC20_01440) - 246957..247262 (+) 306 WP_002877666.1 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=138142 RC20_RS01390 WP_002852324.1 241897..242334(+) (Cj0683) [Campylobacter jejuni strain CJ677CC086]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=138142 RC20_RS01390 WP_002852324.1 241897..242334(+) (Cj0683) [Campylobacter jejuni strain CJ677CC086]
ATGAATAAAGCTTTTACTTTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment