Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   RC05_RS06740 Genome accession   NZ_CP010484
Coordinates   1291458..1291769 (-) Length   103 a.a.
NCBI ID   WP_002932309.1    Uniprot ID   A0A5T1CZI8
Organism   Campylobacter jejuni strain CJ677CC034     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1286458..1296769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC05_RS06720 (RC05_06715) ctsE 1287326..1288885 (-) 1560 WP_059110980.1 GspE/PulE family protein Machinery gene
  RC05_RS06725 (RC05_06720) ctsX 1288875..1289462 (-) 588 WP_002932306.1 hypothetical protein Machinery gene
  RC05_RS06730 (RC05_06725) ctsP 1289466..1290074 (-) 609 WP_002932308.1 ATP-binding protein Machinery gene
  RC05_RS06735 (RC05_06730) mshL 1290067..1291480 (-) 1414 Protein_1336 pilus (MSHA type) biogenesis protein MshL -
  RC05_RS06740 (RC05_06735) ctsR 1291458..1291769 (-) 312 WP_002932309.1 hypothetical protein Machinery gene
  RC05_RS06745 (RC05_06740) nifJ 1291793..1295353 (-) 3561 WP_002932311.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  RC05_RS06750 (RC05_06745) - 1295446..1296087 (-) 642 WP_002932313.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12431.31 Da        Isoelectric Point: 6.4656

>NTDB_id=138135 RC05_RS06740 WP_002932309.1 1291458..1291769(-) (ctsR) [Campylobacter jejuni strain CJ677CC034]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=138135 RC05_RS06740 WP_002932309.1 1291458..1291769(-) (ctsR) [Campylobacter jejuni strain CJ677CC034]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1CZI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment