Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   RC05_RS01390 Genome accession   NZ_CP010484
Coordinates   241373..241810 (+) Length   145 a.a.
NCBI ID   WP_059110889.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC034     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 236373..246810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC05_RS01370 (RC05_01375) kdpD 236861..238792 (+) 1932 WP_002932500.1 sensor histidine kinase KdpD -
  RC05_RS01375 (RC05_01380) uvrB 238787..240760 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB -
  RC05_RS01380 (RC05_01385) - 240914..241144 (+) 231 WP_002852327.1 hypothetical protein -
  RC05_RS01385 (RC05_01390) - 241134..241376 (+) 243 WP_002854947.1 hypothetical protein -
  RC05_RS01390 (RC05_01395) Cj0683 241373..241810 (+) 438 WP_059110889.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC05_RS01395 (RC05_01400) priA 241792..243645 (+) 1854 WP_002932503.1 primosomal protein N' -
  RC05_RS01400 - 243638..243901 (-) 264 Protein_280 CTP:phosphoglutamine cytidylyltransferase -
  RC05_RS01405 (RC05_01405) - 243891..245357 (-) 1467 WP_153938153.1 cache domain-containing protein -
  RC05_RS01410 (RC05_01410) zupT 245526..246401 (+) 876 WP_002851840.1 zinc transporter ZupT -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16766.70 Da        Isoelectric Point: 6.9036

>NTDB_id=138116 RC05_RS01390 WP_059110889.1 241373..241810(+) (Cj0683) [Campylobacter jejuni strain CJ677CC034]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLENLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=138116 RC05_RS01390 WP_059110889.1 241373..241810(+) (Cj0683) [Campylobacter jejuni strain CJ677CC034]
ATGAATAAAGCTTTTACTTTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTGAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment