Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   RC09_RS01380 Genome accession   NZ_CP010482
Coordinates   241331..241768 (+) Length   145 a.a.
NCBI ID   WP_059110889.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC041     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 236331..246768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC09_RS01360 (RC09_01365) kdpD 236819..238750 (+) 1932 WP_002932500.1 sensor histidine kinase KdpD -
  RC09_RS01365 (RC09_01370) uvrB 238745..240718 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB -
  RC09_RS01370 (RC09_01375) - 240872..241102 (+) 231 WP_002852327.1 hypothetical protein -
  RC09_RS01375 (RC09_01380) - 241092..241334 (+) 243 WP_002854947.1 hypothetical protein -
  RC09_RS01380 (RC09_01385) Cj0683 241331..241768 (+) 438 WP_059110889.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC09_RS01385 (RC09_01390) priA 241750..243603 (+) 1854 WP_002932503.1 primosomal protein N' -
  RC09_RS01390 (RC09_01395) - 243596..243859 (-) 264 Protein_276 CTP:phosphoglutamine cytidylyltransferase -
  RC09_RS01395 (RC09_01400) - 243918..244547 (+) 630 WP_002934459.1 LexA family transcriptional regulator -
  RC09_RS01400 (RC09_01405) - 244628..244948 (+) 321 WP_002891469.1 hypothetical protein -
  RC09_RS01405 (RC09_01410) - 244958..245137 (+) 180 WP_059119490.1 hypothetical protein -
  RC09_RS01410 (RC09_01415) - 245100..245384 (+) 285 WP_059119491.1 hypothetical protein -
  RC09_RS01415 (RC09_01420) - 245381..245932 (-) 552 WP_002801718.1 ImmA/IrrE family metallo-endopeptidase -
  RC09_RS08895 - 245929..246102 (-) 174 WP_002801716.1 hypothetical protein -
  RC09_RS08810 - 246370..246537 (-) 168 Protein_283 DNA adenine methylase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16766.70 Da        Isoelectric Point: 6.9036

>NTDB_id=138064 RC09_RS01380 WP_059110889.1 241331..241768(+) (Cj0683) [Campylobacter jejuni strain CJ677CC041]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLENLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=138064 RC09_RS01380 WP_059110889.1 241331..241768(+) (Cj0683) [Campylobacter jejuni strain CJ677CC041]
ATGAATAAAGCTTTTACTTTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTGAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment