Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SAST42_RS03740 Genome accession   NZ_CP012976
Coordinates   769555..770637 (+) Length   360 a.a.
NCBI ID   WP_001805005.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST20130942     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 764555..775637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAST42_RS03720 (SAST42_03355) - 764925..765995 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  SAST42_RS03725 (SAST42_00724) - 766313..767368 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  SAST42_RS03730 (SAST42_00726) - 767540..768181 (-) 642 WP_000192949.1 YigZ family protein -
  SAST42_RS03735 (SAST42_00728) fakB1 768325..769191 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  SAST42_RS03740 (SAST42_00730) comFA 769555..770637 (+) 1083 WP_001805005.1 DEAD/DEAH box helicase Machinery gene
  SAST42_RS03745 (SAST42_03357) - 770630..771304 (+) 675 WP_001057968.1 ComF family protein -
  SAST42_RS03750 (SAST42_00733) hpf 771365..771937 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SAST42_RS03755 (SAST42_00734) secA 772351..774882 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  SAST42_RS03760 - 774924..775023 (+) 100 Protein_718 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42025.60 Da        Isoelectric Point: 9.8922

>NTDB_id=138048 SAST42_RS03740 WP_001805005.1 769555..770637(+) (comFA) [Staphylococcus aureus strain ST20130942]
MDNVTRYKITESSQSSSQAYYHLSFALSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=138048 SAST42_RS03740 WP_001805005.1 769555..770637(+) (comFA) [Staphylococcus aureus strain ST20130942]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGCATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.053

93.889

0.367