Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RC42_RS03060 Genome accession   NZ_CP010474
Coordinates   573760..574728 (-) Length   322 a.a.
NCBI ID   WP_002934383.1    Uniprot ID   A0A5Y9ZMN9
Organism   Campylobacter jejuni strain CJ677CC536     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 568760..579728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC42_RS03035 (RC42_03030) - 570292..570846 (+) 555 WP_002934378.1 hypothetical protein -
  RC42_RS03045 (RC42_03040) ceuB 571072..572064 (-) 993 WP_002934381.1 enterochelin ABC transporter substrate-binding protein CeuB -
  RC42_RS03050 (RC42_03045) ceuD 572077..572832 (-) 756 WP_002934382.1 ABC transporter ATP-binding protein -
  RC42_RS03055 (RC42_03050) ceuC 572829..573767 (-) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  RC42_RS03060 (RC42_03055) ceuB 573760..574728 (-) 969 WP_002934383.1 ABC transporter permease Machinery gene
  RC42_RS03065 (RC42_03060) pldA 574814..575803 (-) 990 WP_002934386.1 phospholipase A -
  RC42_RS03070 (RC42_03065) mobA 575800..576375 (-) 576 WP_002934387.1 molybdenum cofactor guanylyltransferase -
  RC42_RS03075 (RC42_03070) - 576437..577744 (+) 1308 WP_002934388.1 NFACT family protein -
  RC42_RS03080 (RC42_03075) - 577746..578084 (+) 339 WP_002855905.1 hypothetical protein -
  RC42_RS03085 (RC42_03080) cdsA 578093..578818 (+) 726 WP_002934389.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35439.37 Da        Isoelectric Point: 9.6678

>NTDB_id=137884 RC42_RS03060 WP_002934383.1 573760..574728(-) (ceuB) [Campylobacter jejuni strain CJ677CC536]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFIPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=137884 RC42_RS03060 WP_002934383.1 573760..574728(-) (ceuB) [Campylobacter jejuni strain CJ677CC536]
TTGTTTTTTAAACATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAGCAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTATACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
ACTTTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGCATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGACTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAGATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y9ZMN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment