Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   RC42_RS02770 Genome accession   NZ_CP010474
Coordinates   513734..514918 (+) Length   394 a.a.
NCBI ID   WP_002932552.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC536     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 508734..519918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC42_RS02745 (RC42_02745) - 509587..510189 (+) 603 WP_002931920.1 gamma-glutamyl-CDP-amidate hydrolase -
  RC42_RS02750 (RC42_02750) - 510191..510955 (+) 765 WP_059119379.1 CTP:phosphoglutamine cytidylyltransferase -
  RC42_RS02755 (RC42_02755) - 510924..511169 (+) 246 WP_059119380.1 hypothetical protein -
  RC42_RS02760 (RC42_02760) cysC 511159..511671 (+) 513 WP_002932548.1 cytidine diphosphoramidate kinase -
  RC42_RS02765 (RC42_02765) kpsC 511668..513737 (+) 2070 WP_002932550.1 capsular polysaccharide biosynthesis protein -
  RC42_RS02770 (RC42_02770) kpsS 513734..514918 (+) 1185 WP_002932552.1 capsule polysaccharide modification protein KpsS Regulator
  RC42_RS02775 (RC42_02775) - 514991..516112 (+) 1122 WP_002932553.1 hypothetical protein -
  RC42_RS02780 (RC42_02780) - 516109..517470 (+) 1362 WP_002932555.1 cytochrome P450 -
  RC42_RS02785 (RC42_02785) - 517467..517886 (+) 420 WP_002862076.1 hypothetical protein -
  RC42_RS02790 (RC42_02790) acpS 517887..518234 (-) 348 WP_002825806.1 holo-ACP synthase -
  RC42_RS02795 (RC42_02795) fliL 518235..518771 (-) 537 WP_002868488.1 flagellar basal body-associated protein FliL -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46828.53 Da        Isoelectric Point: 9.9031

>NTDB_id=137882 RC42_RS02770 WP_002932552.1 513734..514918(+) (kpsS) [Campylobacter jejuni strain CJ677CC536]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=137882 RC42_RS02770 WP_002932552.1 513734..514918(+) (kpsS) [Campylobacter jejuni strain CJ677CC536]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATGAAAATGAAAAAAAACCAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGGACTAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAACGATTGTCGCATTATACATGCCAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAGGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCCTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAATAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAATCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAACGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTAGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTGTC
TTATCCAAAGAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTGTGTAATTTTAAGA
AATATCTTTTACAAACTAACCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.477

100

0.985


Multiple sequence alignment