Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   RC42_RS00890 Genome accession   NZ_CP010474
Coordinates   156102..156539 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain CJ677CC536     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151102..161539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC42_RS00870 (RC42_00875) kdpD 151590..153521 (+) 1932 WP_002932500.1 sensor histidine kinase KdpD -
  RC42_RS00875 (RC42_00880) uvrB 153516..155489 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB -
  RC42_RS00880 (RC42_00885) - 155643..155873 (+) 231 WP_002852327.1 hypothetical protein -
  RC42_RS00885 (RC42_00890) - 155863..156105 (+) 243 WP_002854947.1 hypothetical protein -
  RC42_RS00890 (RC42_00895) Cj0683 156102..156539 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC42_RS00895 (RC42_00900) priA 156521..158374 (+) 1854 WP_002932503.1 primosomal protein N' -
  RC42_RS08630 - 158367..158510 (-) 144 Protein_182 sugar nucleotidyltransferase -
  RC42_RS08635 - 158482..158637 (+) 156 WP_079756590.1 methyl-accepting chemotaxis protein -
  RC42_RS00900 (RC42_00905) - 158761..159270 (-) 510 WP_002934116.1 DUF2393 family protein -
  RC42_RS00905 (RC42_00910) - 159270..159800 (-) 531 WP_002934113.1 DUF2393 domain-containing protein -
  RC42_RS00910 (RC42_00915) - 159813..160901 (-) 1089 WP_002861052.1 prohibitin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=137878 RC42_RS00890 WP_002852324.1 156102..156539(+) (Cj0683) [Campylobacter jejuni strain CJ677CC536]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=137878 RC42_RS00890 WP_002852324.1 156102..156539(+) (Cj0683) [Campylobacter jejuni strain CJ677CC536]
ATGAATAAAGCTTTTACTTTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment