Detailed information
Bioinformatically predicted
Overview
| Name | ctsF | Type | Machinery gene |
| Locus tag | RC40_RS06720 | Genome accession | NZ_CP010473 |
| Coordinates | 1284232..1285410 (-) | Length | 392 a.a. |
| NCBI ID | WP_002932300.1 | Uniprot ID | A0A5T1D2G9 |
| Organism | Campylobacter jejuni strain CJ677CC534 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1279232..1290410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RC40_RS06690 (RC40_06680) | - | 1279774..1280115 (+) | 342 | WP_002932295.1 | hypothetical protein | - |
| RC40_RS06695 (RC40_06685) | flgM | 1280178..1280375 (+) | 198 | WP_002792053.1 | flagellar biosynthesis anti-sigma factor FlgM | - |
| RC40_RS06700 (RC40_06690) | - | 1280417..1280851 (+) | 435 | WP_002779263.1 | flagellar protein FlgN | - |
| RC40_RS06705 (RC40_06695) | flgK | 1280861..1282687 (+) | 1827 | WP_002932296.1 | flagellar hook-associated protein FlgK | - |
| RC40_RS06710 (RC40_06700) | - | 1282704..1283468 (+) | 765 | WP_002932297.1 | TIGR02757 family protein | - |
| RC40_RS06715 (RC40_06705) | - | 1283471..1284235 (+) | 765 | WP_002932298.1 | TSUP family transporter | - |
| RC40_RS06720 (RC40_06710) | ctsF | 1284232..1285410 (-) | 1179 | WP_002932300.1 | type II secretion system F family protein | Machinery gene |
| RC40_RS06725 (RC40_06715) | ctsE | 1285407..1286966 (-) | 1560 | WP_032598692.1 | GspE/PulE family protein | Machinery gene |
| RC40_RS06730 (RC40_06720) | ctsX | 1286956..1287543 (-) | 588 | WP_002932306.1 | hypothetical protein | Machinery gene |
| RC40_RS06735 (RC40_06725) | ctsP | 1287547..1288155 (-) | 609 | WP_002932308.1 | ATP-binding protein | Machinery gene |
| RC40_RS06740 (RC40_06730) | mshL | 1288148..1289560 (-) | 1413 | Protein_1328 | pilus (MSHA type) biogenesis protein MshL | - |
| RC40_RS06745 (RC40_06735) | ctsR | 1289538..1289849 (-) | 312 | WP_002932309.1 | hypothetical protein | Machinery gene |
Sequence
Protein
Download Length: 392 a.a. Molecular weight: 45674.31 Da Isoelectric Point: 9.0938
>NTDB_id=137868 RC40_RS06720 WP_002932300.1 1284232..1285410(-) (ctsF) [Campylobacter jejuni strain CJ677CC534]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINF
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINF
Nucleotide
Download Length: 1179 bp
>NTDB_id=137868 RC40_RS06720 WP_002932300.1 1284232..1285410(-) (ctsF) [Campylobacter jejuni strain CJ677CC534]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCCAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGCGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCAGGTATAAATTTTTAA
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCCAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGCGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCAGGTATAAATTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsF | Campylobacter jejuni subsp. jejuni 81-176 |
98.469 |
100 |
0.985 |