Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   RC40_RS02945 Genome accession   NZ_CP010473
Coordinates   540238..540675 (+) Length   145 a.a.
NCBI ID   WP_059110744.1    Uniprot ID   A0A5T1D4E0
Organism   Campylobacter jejuni strain CJ677CC534     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535238..545675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC40_RS02925 (RC40_02925) kdpD 535726..537657 (+) 1932 WP_002932500.1 sensor histidine kinase KdpD -
  RC40_RS02930 (RC40_02930) uvrB 537652..539625 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB -
  RC40_RS02935 (RC40_02935) - 539779..540009 (+) 231 WP_002852327.1 hypothetical protein -
  RC40_RS02940 (RC40_02940) - 539999..540241 (+) 243 WP_002854947.1 hypothetical protein -
  RC40_RS02945 (RC40_02945) Cj0683 540238..540675 (+) 438 WP_059110744.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC40_RS02950 (RC40_02950) priA 540657..542378 (+) 1722 Protein_585 primosomal protein N' -
  RC40_RS02955 (RC40_02955) - 542357..543118 (-) 762 WP_059110745.1 CTP:phosphoglutamine cytidylyltransferase -
  RC40_RS02960 (RC40_02960) - 543120..543722 (-) 603 WP_002931920.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16825.86 Da        Isoelectric Point: 8.0993

>NTDB_id=137856 RC40_RS02945 WP_059110744.1 540238..540675(+) (Cj0683) [Campylobacter jejuni strain CJ677CC534]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDFKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=137856 RC40_RS02945 WP_059110744.1 540238..540675(+) (Cj0683) [Campylobacter jejuni strain CJ677CC534]
ATGAATAAAGCTTTTACTTTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTTTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1D4E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment