Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   ACT75_RS13070 Genome accession   NZ_CP012959
Coordinates   960431..961177 (+) Length   248 a.a.
NCBI ID   WP_230456974.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 624     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 955431..966177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT75_RS13065 - 955840..956217 (+) 378 WP_236759973.1 hypothetical protein -
  ACT75_RS04610 (ACT75_04605) - 956142..957341 (+) 1200 WP_236759975.1 hypothetical protein -
  ACT75_RS04615 (ACT75_04610) - 957338..957982 (+) 645 WP_005538790.1 hypothetical protein -
  ACT75_RS04620 (ACT75_04615) - 958584..960545 (+) 1962 WP_061866541.1 AAA family ATPase -
  ACT75_RS13070 (ACT75_04620) clpC 960431..961177 (+) 747 WP_230456974.1 AAA family ATPase Regulator
  ACT75_RS04630 (ACT75_04625) - 961294..962712 (+) 1419 WP_061866542.1 DUF4123 domain-containing protein -
  ACT75_RS12425 - 962712..962867 (+) 156 WP_005595526.1 hypothetical protein -
  ACT75_RS04635 (ACT75_04630) - 962952..965561 (+) 2610 WP_309143024.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 27923.32 Da        Isoelectric Point: 6.9628

>NTDB_id=137769 ACT75_RS13070 WP_230456974.1 960431..961177(+) (clpC) [Aggregatibacter actinomycetemcomitans strain 624]
MGKTETAIQIAEHIFGGKQFLTTINMSEYQEKHTISRLIGSPPGYVGYGEGGLLTEAIRQKPYSIVLLDEVEKAHPDVLN
LFYQAFDKGELADGEGRLIDCKNILFMLTSNCGFDAANDRFAVKTDEELRRSLLSFFKPALLARMQIVQYHYLSTEVMQR
IVKAKLTKLEKLVSERYKTTFTIASNILSHIERQCEADANGARLVDAILEGQLLPPLSLALLQRMATGEKMTNIILNFEK
GEYQVKVK

Nucleotide


Download         Length: 747 bp        

>NTDB_id=137769 ACT75_RS13070 WP_230456974.1 960431..961177(+) (clpC) [Aggregatibacter actinomycetemcomitans strain 624]
GTGGGTAAAACAGAAACTGCGATTCAAATCGCTGAACATATTTTTGGCGGAAAACAATTCCTCACCACCATTAACATGTC
GGAATATCAAGAAAAACATACCATATCACGCTTAATCGGTTCGCCTCCGGGTTATGTGGGGTATGGCGAAGGTGGTCTAC
TTACAGAAGCCATTCGTCAAAAACCTTACTCTATTGTACTATTAGATGAAGTGGAAAAAGCCCATCCTGATGTACTTAAT
TTGTTCTATCAAGCCTTTGATAAAGGTGAACTTGCCGATGGTGAAGGGCGTTTGATTGATTGTAAAAACATTCTCTTTAT
GCTCACCTCAAACTGTGGCTTTGATGCCGCCAATGACCGCTTTGCCGTGAAAACCGATGAAGAACTCCGCCGTTCTCTGC
TTTCCTTCTTCAAACCGGCATTATTGGCACGTATGCAAATCGTGCAATATCACTATTTAAGCACAGAAGTGATGCAGCGT
ATTGTAAAAGCCAAATTGACAAAATTAGAAAAATTAGTGTCTGAACGCTATAAAACCACCTTCACTATTGCGTCGAATAT
TCTCTCTCATATTGAACGGCAATGTGAAGCCGACGCTAACGGTGCACGCTTAGTGGATGCAATTTTAGAAGGGCAGCTCC
TGCCTCCGCTTTCCTTAGCGCTGCTTCAACGTATGGCAACCGGTGAAAAGATGACAAATATCATCCTTAATTTTGAAAAA
GGTGAATATCAGGTTAAAGTAAAGTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(1-147)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(153-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

36.882

100

0.391