Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   ACT75_RS04475 Genome accession   NZ_CP012959
Coordinates   929558..931447 (-) Length   629 a.a.
NCBI ID   WP_005595387.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 924558..936447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT75_RS04465 (ACT75_04460) coaA 926072..926986 (+) 915 WP_005595390.1 type I pantothenate kinase -
  ACT75_RS04470 (ACT75_04465) gyrB 927041..929461 (-) 2421 WP_005551364.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ACT75_RS04475 (ACT75_04470) recQ 929558..931447 (-) 1890 WP_005595387.1 DNA helicase RecQ Machinery gene
  ACT75_RS04480 (ACT75_04475) cyaY 931444..931758 (-) 315 WP_005540693.1 iron donor protein CyaY -
  ACT75_RS13050 lptM 931881..932000 (+) 120 WP_005540691.1 LPS translocon maturation chaperone LptM -
  ACT75_RS04485 (ACT75_04480) lysA 932018..933268 (+) 1251 WP_005540689.1 diaminopimelate decarboxylase -
  ACT75_RS04490 (ACT75_04485) - 933321..933926 (-) 606 WP_005540687.1 YagU family protein -
  ACT75_RS04495 (ACT75_04490) - 934127..934687 (+) 561 WP_005540685.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 629 a.a.        Molecular weight: 70953.14 Da        Isoelectric Point: 8.0828

>NTDB_id=137724 ACT75_RS04475 WP_005595387.1 929558..931447(-) (recQ) [Aggregatibacter actinomycetemcomitans strain 624]
MSDLNPSKPTKSAVDFADESSVNSTALHASALHVLHSVFGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPAL
CFDGTTLVVSPLISLMKDQVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEKVMTSSFFQFISLCQVSF
IAIDEAHCISQWGHDFRPEYTQLGGLKGSFPNVPIMALTATADQTTQQDILQNLRLNRPHFYVGSFDRPNIRYTLVEKFK
PMEQLCRFVLAQKGKSGIVYCNSRNKVERIAETLYNKGVRAAAYHAGMENGLREKVQRDFQRDNIQVVVATIAFGMGINK
SNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPADYVWLNKMLMEKPETPQRQIEQHKLQAIGEFAESQTCRR
LVLLNYFGEHRQTPCQNCDICLDPPKKYNGLLDAQKIMSAIYRTGQCYGAHYVIAVLRGMNNQKIRDQHHDQLSVYGIGK
EHGTEYWQSVLRQLVHLGLVRQIIGEYGNTLQLTENAKPILRGEEPLELATPRLSSIVTTAMMPKSAVGSYNKDLFARLR
FLRKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGAIKLERFGQAFLALIREHKNARAGE

Nucleotide


Download         Length: 1890 bp        

>NTDB_id=137724 ACT75_RS04475 WP_005595387.1 929558..931447(-) (recQ) [Aggregatibacter actinomycetemcomitans strain 624]
ATGAGCGACCTTAACCCGTCCAAACCAACAAAAAGTGCGGTAGATTTTGCCGATGAATCGTCGGTAAATTCCACCGCACT
TCATGCTTCCGCATTGCACGTTTTGCATTCGGTTTTCGGCTATCAATCCTTCCGCAAAGGGCAGCAGGAAATCATCAATG
CGGTACTTAACGGGCAGGATTGTTTGGTGATTATGGCGACGGGCACGGGCAAATCGTTGTGTTATCAAATTCCCGCCCTT
TGTTTTGACGGCACGACGCTGGTGGTTTCACCGTTGATTTCCCTGATGAAAGACCAAGTGGATCAGCTGCGCGCCAACGG
CGTGGCAGCGGATTATTTAAATTCCACACAAACCTTCGAAGAACAGCAACAGGTGCAGAATCGGGCAATTTCCGGGCAAT
TAAAATTATTGTATTTATCGCCGGAAAAAGTCATGACCAGCAGCTTTTTCCAATTTATTTCTTTATGCCAAGTGAGTTTT
ATCGCCATTGATGAAGCGCACTGCATTTCCCAATGGGGACACGATTTCCGTCCCGAATATACCCAACTCGGCGGCTTAAA
AGGCAGCTTTCCGAACGTGCCGATCATGGCGCTCACTGCTACAGCGGATCAGACTACACAACAAGACATCCTGCAAAATC
TCCGGCTAAATCGACCGCACTTTTATGTGGGCAGCTTCGATCGCCCGAACATTCGTTACACCTTGGTGGAAAAATTCAAA
CCCATGGAACAGCTTTGCCGTTTCGTGCTGGCGCAAAAGGGCAAGAGCGGCATTGTGTATTGCAACAGCCGCAATAAAGT
GGAACGTATCGCGGAAACCCTGTACAACAAAGGCGTGCGGGCGGCGGCGTATCATGCCGGCATGGAAAACGGCTTGCGCG
AAAAAGTACAACGGGATTTTCAGCGTGACAACATTCAAGTGGTGGTGGCGACCATTGCGTTCGGCATGGGCATTAATAAA
TCCAACGTGCGCTTTGTGGCACATTTTGACCTGCCGCGCAGCATCGAATCCTACTATCAGGAAACCGGTCGTGCGGGGCG
CGATGATTTGCCGGCGGAAGCGGTATTGTTTTACGACCCGGCAGATTATGTGTGGCTCAACAAAATGCTGATGGAAAAGC
CGGAAACGCCGCAACGGCAGATTGAACAGCACAAATTGCAAGCCATCGGTGAATTTGCCGAAAGCCAAACCTGCCGTCGT
TTGGTTTTATTGAATTATTTCGGCGAACATCGCCAAACGCCCTGTCAAAATTGCGATATTTGTCTCGATCCGCCGAAAAA
ATATAACGGCTTGTTGGATGCGCAAAAAATCATGTCGGCGATTTATCGCACCGGTCAATGTTATGGCGCGCATTATGTCA
TCGCCGTATTGCGTGGCATGAACAATCAGAAAATTCGTGACCAACACCATGATCAATTAAGCGTGTACGGCATTGGCAAA
GAACATGGCACGGAATATTGGCAGTCGGTATTGCGCCAGCTGGTGCACTTGGGGTTGGTGCGCCAAATCATCGGCGAATA
CGGCAACACCTTACAATTAACGGAAAACGCCAAACCGATTTTACGCGGAGAAGAACCGCTGGAATTGGCAACGCCACGGC
TGTCTTCCATTGTCACTACCGCCATGATGCCCAAAAGTGCGGTGGGTTCTTACAACAAAGATCTGTTTGCCCGCTTGCGC
TTTCTGCGTAAACAAATTGCCGATAAGGAAAATATTCCGCCGTATATTGTGTTTAACGACGCAACGCTACAGGAAATGGC
GCAATATCAACCTGTCAGTAACATTGAAATGCTGCAAATTAACGGCGTCGGCGCCATTAAACTGGAGCGTTTCGGGCAGG
CATTTCTTGCTTTAATTCGCGAGCATAAAAACGCCCGCGCCGGCGAATAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(361-422)

HRDC domain (HRDC)

(553-619)

Helicase conserved C-terminal domain (Helicase_C)

(243-347)

RQC domain (RQC)

(424-533)

DEAD/DEAH box helicase (DEAD)

(47-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.16

94.595

0.37

Multiple sequence alignment