Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACT74_RS09775 Genome accession   NZ_CP012958
Coordinates   2020812..2021447 (+) Length   211 a.a.
NCBI ID   WP_053330351.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain VT1169     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2015812..2026447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT74_RS09765 (ACT74_09760) fusA 2016174..2018276 (+) 2103 WP_061870021.1 elongation factor G -
  ACT74_RS09770 (ACT74_09765) tuf 2018340..2019524 (+) 1185 WP_014167500.1 elongation factor Tu -
  ACT74_RS09775 (ACT74_09770) sxy/tfoX 2020812..2021447 (+) 636 WP_053330351.1 TfoX/Sxy family DNA transformation protein Regulator
  ACT74_RS09780 (ACT74_09775) rpoH 2021514..2022362 (-) 849 WP_005548059.1 RNA polymerase sigma factor RpoH -
  ACT74_RS09785 (ACT74_09780) - 2022547..2022861 (-) 315 WP_005548062.1 DUF2322 family protein -
  ACT74_RS09790 (ACT74_09785) murB 2022877..2023902 (-) 1026 WP_005566996.1 UDP-N-acetylmuramate dehydrogenase -
  ACT74_RS09795 (ACT74_09790) narQ 2023917..2025620 (-) 1704 WP_005548066.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  ACT74_RS09800 (ACT74_09795) - 2025896..2026180 (+) 285 WP_005548070.1 chaperone NapD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24000.13 Da        Isoelectric Point: 10.4976

>NTDB_id=137710 ACT74_RS09775 WP_053330351.1 2020812..2021447(+) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain VT1169]
MTTVSQRLKNEFKQLVDGEISIKNLFTGHGIFHSGIMFALHQNDSIFLRAEDELVPYLESLGAVAYSIDPNNTNKLALHR
YYQLPHSIRKNKPLFEKTVKLSIQQAKFKKVAEDLTKKERIKELANFSIKHERLLAKINIYTVSEFQKIGAIHSYFRLKK
LGVSANVELLWTLCAALKNKHASLLTEKEKSAILTKLNVLLAANGLRKVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=137710 ACT74_RS09775 WP_053330351.1 2020812..2021447(+) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain VT1169]
ATGACAACGGTATCTCAAAGACTCAAGAACGAATTCAAACAACTAGTAGATGGTGAAATCAGTATTAAAAATTTATTCAC
CGGACATGGTATATTTCATTCAGGAATAATGTTTGCACTTCATCAAAACGATAGCATTTTCTTGCGGGCTGAAGATGAGT
TAGTCCCTTACTTAGAAAGTTTAGGTGCTGTAGCTTATTCAATTGATCCCAATAATACGAATAAACTGGCACTCCACCGT
TACTATCAACTTCCTCATTCTATTCGTAAAAATAAGCCGTTATTTGAAAAAACCGTTAAATTGTCTATTCAACAGGCAAA
ATTTAAGAAAGTCGCTGAAGATTTGACAAAAAAAGAGCGAATTAAAGAATTGGCTAATTTTTCCATTAAGCATGAAAGAT
TGCTGGCTAAAATTAATATTTATACGGTAAGTGAATTTCAGAAGATCGGCGCAATTCACAGCTATTTTAGGTTAAAGAAA
CTGGGTGTTTCTGCCAACGTAGAATTGTTATGGACTTTATGCGCCGCATTAAAAAATAAGCATGCTTCGTTGCTTACGGA
AAAGGAAAAATCGGCAATTTTGACTAAATTAAATGTTTTACTTGCAGCAAATGGTTTGCGGAAAGTAAAGGCCTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(118-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40

92.417

0.37

Multiple sequence alignment