Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   RC47_RS00920 Genome accession   NZ_CP010466
Coordinates   158871..159308 (+) Length   145 a.a.
NCBI ID   WP_059110889.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC541     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 153871..164308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC47_RS00900 (RC47_00905) kdpD 154359..156290 (+) 1932 WP_002932500.1 sensor histidine kinase KdpD -
  RC47_RS00905 (RC47_00910) uvrB 156285..158258 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB -
  RC47_RS00910 (RC47_00915) - 158412..158642 (+) 231 WP_002852327.1 hypothetical protein -
  RC47_RS00915 (RC47_00920) - 158632..158874 (+) 243 WP_002854947.1 hypothetical protein -
  RC47_RS00920 (RC47_00925) Cj0683 158871..159308 (+) 438 WP_059110889.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC47_RS00925 (RC47_00930) priA 159290..161143 (+) 1854 WP_002932503.1 primosomal protein N' -
  RC47_RS00930 (RC47_00935) - 161282..162235 (-) 954 Protein_192 methyl-accepting chemotaxis protein -
  RC47_RS00935 (RC47_00940) - 162246..163592 (-) 1347 WP_059118802.1 cache domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16766.70 Da        Isoelectric Point: 6.9036

>NTDB_id=137665 RC47_RS00920 WP_059110889.1 158871..159308(+) (Cj0683) [Campylobacter jejuni strain CJ677CC541]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLENLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=137665 RC47_RS00920 WP_059110889.1 158871..159308(+) (Cj0683) [Campylobacter jejuni strain CJ677CC541]
ATGAATAAAGCTTTTACTTTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTGAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment