Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AEI16_RS05950 Genome accession   NZ_CP012957
Coordinates   1123153..1123647 (+) Length   164 a.a.
NCBI ID   WP_002860433.1    Uniprot ID   Q5HTR6
Organism   Campylobacter jejuni strain CJ001CC354     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118153..1128647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI16_RS05935 (AEI16_05905) - 1119539..1120717 (-) 1179 WP_002867378.1 metal-dependent hydrolase -
  AEI16_RS05940 (AEI16_05910) gpsA 1120727..1121623 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AEI16_RS05945 (AEI16_05915) gatB 1121620..1123038 (-) 1419 WP_002867377.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  AEI16_RS05950 (AEI16_05920) luxS 1123153..1123647 (+) 495 WP_002860433.1 S-ribosylhomocysteine lyase Regulator
  AEI16_RS05955 (AEI16_05925) - 1123958..1124950 (+) 993 WP_002867376.1 isopenicillin N synthase family dioxygenase -
  AEI16_RS05960 (AEI16_05930) - 1124961..1125731 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AEI16_RS05965 (AEI16_05935) metE 1125743..1128007 (+) 2265 WP_002860435.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18271.22 Da        Isoelectric Point: 6.3290

>NTDB_id=137642 AEI16_RS05950 WP_002860433.1 1123153..1123647(+) (luxS) [Campylobacter jejuni strain CJ001CC354]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=137642 AEI16_RS05950 WP_002860433.1 1123153..1123647(+) (luxS) [Campylobacter jejuni strain CJ001CC354]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HTR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707