Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   AEI16_RS02940 Genome accession   NZ_CP012957
Coordinates   549113..549496 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain CJ001CC354     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 544113..554496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI16_RS02920 (AEI16_02945) - 544192..546126 (-) 1935 WP_002867720.1 RNB domain-containing ribonuclease -
  AEI16_RS02925 (AEI16_02950) ilvC 546245..547267 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  AEI16_RS02930 (AEI16_02955) - 547271..548353 (+) 1083 WP_074482719.1 divergent polysaccharide deacetylase family protein -
  AEI16_RS02935 (AEI16_02960) dprA 548343..549116 (+) 774 WP_002867721.1 DNA-processing protein DprA Machinery gene
  AEI16_RS02940 (AEI16_02965) dprB 549113..549496 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  AEI16_RS02945 (AEI16_02970) - 549525..550364 (+) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI16_RS02950 (AEI16_02975) msrA 550541..551038 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI16_RS02955 (AEI16_02980) ppa 551080..551598 (-) 519 WP_002867724.1 inorganic diphosphatase -
  AEI16_RS02960 (AEI16_02985) adk 551608..552186 (-) 579 WP_002859580.1 adenylate kinase -
  AEI16_RS02965 (AEI16_02990) aspS 552183..553934 (-) 1752 WP_002867725.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=137628 AEI16_RS02940 WP_002852281.1 549113..549496(+) (dprB) [Campylobacter jejuni strain CJ001CC354]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=137628 AEI16_RS02940 WP_002852281.1 549113..549496(+) (dprB) [Campylobacter jejuni strain CJ001CC354]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449