Detailed information NTG0137625

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AEI16_RS02320
• Genome accession: NZ_CP012957
• Coordinates: 427784..430357 (-)
• Length: 857 a.a.
• NCBI ID: WP_052783179.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain CJ001CC354
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 422784..435357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AEI16_RS02310 (AEI16_02350)	maf	425277..425828 (+)	552	WP_002855005.1	septum formation inhibitor Maf	-
AEI16_RS02315 (AEI16_02355)	pbpA	425825..427756 (+)	1932	WP_002867666.1	penicillin-binding protein 1A	-
AEI16_RS02320 (AEI16_02360)	clpC	427784..430357 (-)	2574	WP_052783179.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
AEI16_RS02325 (AEI16_02365)	-	430469..430759 (-)	291	WP_002859054.1	metal-sensing transcriptional repressor	-
AEI16_RS02330 (AEI16_02370)	-	430877..432211 (+)	1335	WP_052783180.1	S41 family peptidase	-
AEI16_RS02335 (AEI16_02375)	purC	432213..432923 (+)	711	WP_052783181.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
AEI16_RS02340 (AEI16_02380)	purS	432932..433177 (+)	246	WP_002858611.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
AEI16_RS02345 (AEI16_02385)	purQ	433179..433851 (+)	673	Protein_459	phosphoribosylformylglycinamidine synthase I	-
AEI16_RS02350 (AEI16_02390)	-	433823..435019 (+)	1197	WP_002887697.1	SH3 domain-containing protein	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95552.68 Da
• Isoelectric Point: 5.2764

>NTDB_id=137625 AEI16_RS02320 WP_052783179.1 427784..430357(-) (clpC) [Campylobacter jejuni strain CJ001CC354]
MANIQDFLTDNMLSNLESAVSLAIHSKNNEVAPLHLLWALSVDNASILNQILNKLNISKEALELEIKSRISKLATSSNVN
RENIRFSNELINSLENAKGLMSANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYITDRFLPDKAIDLIDEAAAE
LKMQIESEPNSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELANLKEKQNALNSQFENEKSVFDGISAKKKEID
LLKNEASLAKARGEFQKAAELEYGKIPSLEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILT
SNIASSAIMNLSGKEQEDAVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENAAL
LIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKKA

Nucleotide

• Length: 2574 bp

>NTDB_id=137625 AEI16_RS02320 WP_052783179.1 427784..430357(-) (clpC) [Campylobacter jejuni strain CJ001CC354]
ATGGCAAATATACAAGATTTTTTAACTGATAATATGCTTTCAAACCTTGAAAGTGCAGTATCTTTAGCTATACATTCTAA
AAATAATGAAGTTGCACCTTTACATCTTTTATGGGCTTTAAGCGTAGATAATGCAAGTATTTTAAATCAAATTTTAAATA
AATTAAATATTTCTAAAGAAGCCTTAGAGCTTGAAATTAAAAGCAGAATTTCAAAACTTGCAACGAGTTCAAATGTAAAC
CGTGAAAATATACGCTTTTCCAATGAACTTATAAATTCATTAGAAAATGCTAAAGGATTAATGAGTGCTAATGGAGATAG
TTATTTAAGTGTGGATACTTGGCTTATAAGTGAAAGTCAAAAAAGTCCTATTAAAGAAATTTTGGCGCAATTTTTAGATT
TAAGAGAATTTCAAAAAGAGCTTGAAAGTCTAAGAGCGGGACGCAAAATCGATAGCAAAACAAGCGATGAAACCTTAGAC
AGCTTAAATAAATTTGGTATAGATTTAACCTTAAAAGCAAGCGAGGGTAAACTTGATCCTGTTATAGGCAGAGAAGAAGA
AATCGAACGTTTGATGCAAATTTTAATACGCAAAACCAAAAATAACCCTATACTTTTAGGTGAACCAGGCGTAGGAAAAA
CAGCTATAGTAGAAGCTTTAGCACAAAGAATTATCAAAAAAGATGTTCCAAAATCTTTGCAAAATAAAAAAGTTATCGCT
CTTGATATGAGTGCTTTAATTGCAGGTGCAAAATACAGAGGAGAATTCGAAGATAGATTAAAAGCTGTGGTTAATGAAGT
GATAAAAAGTGAAAATATCATTCTTTTTATCGATGAAATTCACACTATAGTAGGAGCTGGAGCGAGTGAAGGCAGCATGG
ATGCGGCAAATATTTTAAAACCTGCTCTTGCAAGAGGTGAACTCCATACCATAGGCGCAACTACTTTAAAAGAATATCGT
AAATATTTTGAAAAAGATGCAGCCTTGCAACGCCGTTTTCAACCTGTAAATGTAGGTGAGCCAAGTGTTAATGAGGCTTT
GGCTATGTTAAGGGGTATAAAAGAAAAGCTTGAAATTCATCATAATGTAACCATAAATGATAGTGCTTTAGTAGCCGCAG
CTAAACTTTCAAAGCGTTATATAACAGATCGTTTTTTACCTGATAAGGCCATTGATTTAATCGATGAAGCTGCAGCTGAA
CTAAAAATGCAAATTGAAAGCGAACCAAATTCTTTAAGAAAAGTACGCAAAGATATAGAAACTTTAGAAGTTGAAAATGA
AGCTTTAAAAATGGAAAATGATGAAAAAAATCAAAAAAGACTCGATGAAATCGCAAAAGAACTAGCTAATTTAAAAGAAA
AACAAAATGCCCTAAATTCACAGTTTGAAAATGAAAAAAGTGTTTTTGATGGCATAAGTGCTAAGAAAAAAGAAATTGAT
CTGCTTAAAAATGAAGCTTCTTTGGCTAAAGCTAGAGGTGAATTTCAAAAAGCAGCCGAGCTAGAGTATGGAAAAATTCC
AAGTCTTGAAAAAGAAGTAGAAATTTTAGAAGATAAATGGAAAAAAATGAGTGAAAATGGAGTTTTACTTAAAAATCAAG
TGGATGAGGATTTGGTTGCTGGAATTTTAAGCAAATGGACGGGTATTAGCGTGCAAAAAATGTTAACTTCTGAAAAACAA
AAATTCTTAGAAGTGGAAAAACATTTAAAAGAAAGTGTCATAGGACAAGATAAGGCCTTAAGTGCTTTAGCTAGAGCCAT
TAAACGTAACAAAGCAGGGCTTAATGCGGACAATAAACCTATAGGAAGCTTTTTATTTTTAGGGCCAACAGGGGTAGGAA
AAACACAATCGGCTAAAGCTTTGGCAAAATTTTTATTTGATGATGAAAAAGCAATGATTCGCTTTGATATGAGTGAATTT
ATGGAAAAACATAGTGTTTCAAGACTCTTAGGTGCGCCTCCAGGATATATAGGACATGAAGAAGGTGGAGAGCTTACTGA
AGCCGTACGAAGAAAACCTTATAGCGTGCTTTTGTTTGATGAAGTTGAAAAAGCACATAAAGATGTATTTAATGTGCTTT
TAGGGATTTTAGATGATGGTAGAGCAACCGATAGTAAAGGTGTAACAGTGGATTTTAAAAATACCATTATCATTTTAACT
TCTAATATCGCCTCAAGCGCCATTATGAATTTAAGCGGAAAAGAACAAGAAGATGCGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAGTTTTTAAACCGTTTAGATGATATTATCACCTTTAATCCACTTGGAAAAGATGAAGCTTATGAAATAG
TCAAGCTTTTATTTAAAGATTTACAAATGAGCTTAGAAAACAAGGGAATAAAAGCAAGTTTAAGCGAAAATGCAGCCCTT
TTAATCGCTAAAGATGGTTTTGACCCTGATTTTGGTGCTAGACCTTTAAGAAGAGCTATTTATGATCTTATAGAAGATAA
ATTAAGCGATATGATACTTGCTGATGAACTTCATGAAAATGATAGCATTATCATTGATGCAAAAGATGATGAAATAATCA
TCAAAAAAGCTTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-844)

• AAA lid domain (AAA_lid_9) (342-444)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.407	100	0.434
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.466	100	0.422