Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | RC28_RS05405 | Genome accession | NZ_CP010463 |
| Coordinates | 1030057..1031007 (+) | Length | 316 a.a. |
| NCBI ID | WP_002933188.1 | Uniprot ID | A0A5T1IXP3 |
| Organism | Campylobacter jejuni strain CJ677CC522 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1009732..1045925 | 1030057..1031007 | within | 0 |
Gene organization within MGE regions
Location: 1009732..1045925
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RC28_RS05295 (RC28_05290) | pglI | 1009732..1010661 (-) | 930 | WP_002932672.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| RC28_RS05300 (RC28_05295) | pglH | 1010654..1011733 (-) | 1080 | WP_072225867.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| RC28_RS05305 (RC28_05300) | pglK | 1011730..1013424 (-) | 1695 | WP_002932660.1 | ABC-type lipopolysaccharide transporter PglK | - |
| RC28_RS05310 (RC28_05305) | galE | 1013418..1014404 (-) | 987 | WP_002891881.1 | UDP-glucose 4-epimerase GalE | - |
| RC28_RS05315 (RC28_05310) | - | 1014463..1015257 (-) | 795 | WP_002932659.1 | 3'-5' exonuclease | - |
| RC28_RS05320 (RC28_05315) | waaC | 1015324..1016352 (+) | 1029 | WP_002932658.1 | lipopolysaccharide heptosyltransferase I | - |
| RC28_RS05325 (RC28_05320) | htrB | 1016342..1017220 (+) | 879 | WP_002932656.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| RC28_RS05330 (RC28_05325) | - | 1017217..1017918 (+) | 702 | WP_002932655.1 | glycosyltransferase family 2 protein | - |
| RC28_RS05335 (RC28_05330) | rfbA | 1017929..1018807 (+) | 879 | WP_002932653.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| RC28_RS05340 (RC28_05335) | rfbB | 1018807..1019838 (+) | 1032 | WP_002932647.1 | dTDP-glucose 4,6-dehydratase | - |
| RC28_RS05345 (RC28_05340) | wlaRA | 1019841..1020257 (+) | 417 | WP_002932645.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| RC28_RS05350 (RC28_05345) | wlaRB | 1020279..1020683 (+) | 405 | WP_002932644.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| RC28_RS05355 (RC28_05350) | - | 1020673..1021143 (+) | 471 | WP_002932643.1 | acyltransferase | - |
| RC28_RS05360 (RC28_05355) | wlaRD | 1021136..1021954 (+) | 819 | WP_002866154.1 | class E lipooligosaccharide biosynthesis sugar-formyltransferase WlaRD | - |
| RC28_RS05365 (RC28_05360) | - | 1021973..1023049 (+) | 1077 | WP_002932642.1 | glycosyltransferase family A protein | - |
| RC28_RS05370 (RC28_05365) | wlaRG | 1023046..1024131 (+) | 1086 | WP_002932641.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| RC28_RS05375 (RC28_05370) | - | 1024165..1025418 (-) | 1254 | WP_002932640.1 | DUF2972 domain-containing protein | - |
| RC28_RS05380 (RC28_05375) | - | 1025415..1026428 (-) | 1014 | WP_002932637.1 | hypothetical protein | - |
| RC28_RS05385 (RC28_05380) | - | 1026499..1027272 (+) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| RC28_RS05390 (RC28_05385) | wlaTB | 1027265..1028221 (+) | 957 | WP_002869613.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| RC28_RS05395 (RC28_05390) | wlaTC | 1028218..1029177 (+) | 960 | WP_048818625.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| RC28_RS05400 (RC28_05395) | - | 1029180..1029998 (-) | 819 | WP_002933186.1 | glycosyltransferase family 2 protein | - |
| RC28_RS05405 (RC28_05400) | waaF | 1030057..1031007 (+) | 951 | WP_002933188.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| RC28_RS05410 (RC28_05405) | - | 1031059..1032558 (+) | 1500 | WP_002933196.1 | MBOAT family O-acyltransferase | - |
| RC28_RS05415 (RC28_05410) | - | 1032706..1033683 (+) | 978 | WP_002933198.1 | hypothetical protein | - |
| RC28_RS05420 (RC28_05415) | gmhA | 1033687..1034247 (-) | 561 | WP_002933201.1 | D-sedoheptulose 7-phosphate isomerase | - |
| RC28_RS05425 (RC28_05420) | rfaE1 | 1034244..1035629 (-) | 1386 | WP_002933204.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| RC28_RS05430 (RC28_05425) | rfaD | 1035622..1036575 (-) | 954 | WP_002933207.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| RC28_RS05435 (RC28_05430) | gmhB | 1036572..1037135 (-) | 564 | WP_002933210.1 | HAD family hydrolase | - |
| RC28_RS05440 (RC28_05435) | - | 1037216..1037518 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| RC28_RS05445 (RC28_05440) | ccoS | 1037542..1037748 (-) | 207 | WP_002933213.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| RC28_RS05450 (RC28_05445) | - | 1037745..1040102 (-) | 2358 | WP_072225866.1 | heavy metal translocating P-type ATPase | - |
| RC28_RS05455 (RC28_05450) | rho | 1040211..1041509 (+) | 1299 | WP_002853705.1 | transcription termination factor Rho | - |
| RC28_RS05460 (RC28_05455) | dnaX | 1041513..1043042 (+) | 1530 | WP_002933222.1 | DNA polymerase III subunit gamma/tau | - |
| RC28_RS05465 (RC28_05460) | - | 1043039..1043560 (-) | 522 | WP_002933224.1 | DUF2165 family protein | - |
| RC28_RS05470 (RC28_05465) | copA | 1043632..1045731 (-) | 2100 | WP_002933226.1 | copper-translocating P-type ATPase CopA | - |
| RC28_RS05475 (RC28_05470) | - | 1045731..1045925 (-) | 195 | WP_002933227.1 | cation transporter | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36201.62 Da Isoelectric Point: 10.1851
>NTDB_id=137596 RC28_RS05405 WP_002933188.1 1030057..1031007(+) (waaF) [Campylobacter jejuni strain CJ677CC522]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLHKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPERVIEEIKKLSTP
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLHKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPERVIEEIKKLSTP
Nucleotide
Download Length: 951 bp
>NTDB_id=137596 RC28_RS05405 WP_002933188.1 1030057..1031007(+) (waaF) [Campylobacter jejuni strain CJ677CC522]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTACAAACAAGCCCTATCTTTACACAAAGAACTTGGTAAAATTGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATATCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGTTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTTATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAACGAAAACGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGTATGAAAGATTTAAAGCCTGAAAGAGTGATAGAAGAAATTAAAAAATTAAGCACCCCATAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTACAAACAAGCCCTATCTTTACACAAAGAACTTGGTAAAATTGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATATCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGTTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTTATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAACGAAAACGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGTATGAAAGATTTAAAGCCTGAAAGAGTGATAGAAGAAATTAAAAAATTAAGCACCCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
95.208 |
99.051 |
0.943 |