Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | RC45_RS05570 | Genome accession | NZ_CP010457 |
| Coordinates | 1047448..1048398 (+) | Length | 316 a.a. |
| NCBI ID | WP_002933188.1 | Uniprot ID | A0A5T1IXP3 |
| Organism | Campylobacter jejuni strain CJ677CC539 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1027123..1063316 | 1047448..1048398 | within | 0 |
Gene organization within MGE regions
Location: 1027123..1063316
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RC45_RS05460 (RC45_05460) | pglI | 1027123..1028052 (-) | 930 | WP_002932672.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| RC45_RS05465 (RC45_05465) | pglH | 1028045..1029124 (-) | 1080 | WP_072225867.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| RC45_RS05470 (RC45_05470) | pglK | 1029121..1030815 (-) | 1695 | WP_059110942.1 | ABC-type lipopolysaccharide transporter PglK | - |
| RC45_RS05475 (RC45_05475) | galE | 1030809..1031795 (-) | 987 | WP_002891881.1 | UDP-glucose 4-epimerase GalE | - |
| RC45_RS05480 (RC45_05480) | - | 1031854..1032648 (-) | 795 | WP_002932659.1 | 3'-5' exonuclease | - |
| RC45_RS05485 (RC45_05485) | waaC | 1032715..1033743 (+) | 1029 | WP_002932658.1 | lipopolysaccharide heptosyltransferase I | - |
| RC45_RS05490 (RC45_05490) | htrB | 1033733..1034611 (+) | 879 | WP_002932656.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| RC45_RS05495 (RC45_05495) | - | 1034608..1035309 (+) | 702 | WP_002932655.1 | glycosyltransferase family 2 protein | - |
| RC45_RS05500 (RC45_05500) | rfbA | 1035320..1036198 (+) | 879 | WP_002932653.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| RC45_RS05505 (RC45_05505) | rfbB | 1036198..1037229 (+) | 1032 | WP_002932647.1 | dTDP-glucose 4,6-dehydratase | - |
| RC45_RS05510 (RC45_05510) | wlaRA | 1037232..1037648 (+) | 417 | WP_002932645.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| RC45_RS05515 (RC45_05515) | wlaRB | 1037670..1038074 (+) | 405 | WP_002932644.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| RC45_RS05520 (RC45_05520) | - | 1038064..1038534 (+) | 471 | WP_002932643.1 | acyltransferase | - |
| RC45_RS05525 (RC45_05525) | wlaRD | 1038527..1039345 (+) | 819 | WP_002866154.1 | class E lipooligosaccharide biosynthesis sugar-formyltransferase WlaRD | - |
| RC45_RS05530 (RC45_05530) | - | 1039364..1040440 (+) | 1077 | WP_002932642.1 | glycosyltransferase family A protein | - |
| RC45_RS05535 (RC45_05535) | wlaRG | 1040437..1041522 (+) | 1086 | WP_002932641.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| RC45_RS05540 (RC45_05540) | - | 1041556..1042809 (-) | 1254 | WP_002932640.1 | DUF2972 domain-containing protein | - |
| RC45_RS05545 (RC45_05545) | - | 1042806..1043819 (-) | 1014 | WP_002932637.1 | hypothetical protein | - |
| RC45_RS05550 (RC45_05550) | - | 1043890..1044663 (+) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| RC45_RS05555 (RC45_05555) | wlaTB | 1044656..1045612 (+) | 957 | WP_002869613.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| RC45_RS05560 (RC45_05560) | wlaTC | 1045609..1046568 (+) | 960 | WP_048818625.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| RC45_RS05565 (RC45_05565) | - | 1046571..1047389 (-) | 819 | WP_059111087.1 | glycosyltransferase family 2 protein | - |
| RC45_RS05570 (RC45_05570) | waaF | 1047448..1048398 (+) | 951 | WP_002933188.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| RC45_RS05575 (RC45_05575) | - | 1048450..1049949 (+) | 1500 | WP_002933196.1 | MBOAT family O-acyltransferase | - |
| RC45_RS05580 (RC45_05580) | - | 1050097..1051074 (+) | 978 | WP_002933198.1 | hypothetical protein | - |
| RC45_RS05585 (RC45_05585) | gmhA | 1051078..1051638 (-) | 561 | WP_059110944.1 | D-sedoheptulose 7-phosphate isomerase | - |
| RC45_RS05590 (RC45_05590) | rfaE1 | 1051635..1053020 (-) | 1386 | WP_002933204.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| RC45_RS05595 (RC45_05595) | rfaD | 1053013..1053966 (-) | 954 | WP_002933207.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| RC45_RS05600 (RC45_05600) | gmhB | 1053963..1054526 (-) | 564 | WP_002933210.1 | HAD family hydrolase | - |
| RC45_RS05605 (RC45_05605) | - | 1054607..1054909 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| RC45_RS05610 (RC45_05610) | ccoS | 1054933..1055139 (-) | 207 | WP_002933213.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| RC45_RS05615 (RC45_05615) | - | 1055136..1057493 (-) | 2358 | WP_072225866.1 | heavy metal translocating P-type ATPase | - |
| RC45_RS05620 (RC45_05620) | rho | 1057602..1058900 (+) | 1299 | WP_002853705.1 | transcription termination factor Rho | - |
| RC45_RS05625 (RC45_05625) | dnaX | 1058904..1060433 (+) | 1530 | WP_002933222.1 | DNA polymerase III subunit gamma/tau | - |
| RC45_RS05630 (RC45_05630) | - | 1060430..1060951 (-) | 522 | WP_059110945.1 | DUF2165 family protein | - |
| RC45_RS05635 (RC45_05635) | copA | 1061023..1063122 (-) | 2100 | WP_059110946.1 | copper-translocating P-type ATPase CopA | - |
| RC45_RS05640 (RC45_05640) | - | 1063122..1063316 (-) | 195 | WP_002933227.1 | cation transporter | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36201.62 Da Isoelectric Point: 10.1851
>NTDB_id=137439 RC45_RS05570 WP_002933188.1 1047448..1048398(+) (waaF) [Campylobacter jejuni strain CJ677CC539]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLHKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPERVIEEIKKLSTP
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLHKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPERVIEEIKKLSTP
Nucleotide
Download Length: 951 bp
>NTDB_id=137439 RC45_RS05570 WP_002933188.1 1047448..1048398(+) (waaF) [Campylobacter jejuni strain CJ677CC539]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTACAAACAAGCCCTATCTTTACACAAAGAACTTGGTAAAATTGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATATCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGTTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTTATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAACGAAAACGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGTATGAAAGATTTAAAGCCTGAAAGAGTGATAGAAGAAATTAAAAAATTAAGCACCCCATAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTACAAACAAGCCCTATCTTTACACAAAGAACTTGGTAAAATTGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATATCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGTTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTTATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAACGAAAACGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGTATGAAAGATTTAAAGCCTGAAAGAGTGATAGAAGAAATTAAAAAATTAAGCACCCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
95.208 |
99.051 |
0.943 |