Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   APQ97_RS08965 Genome accession   NZ_CP012911
Coordinates   1774988..1776649 (-) Length   553 a.a.
NCBI ID   WP_002936255.1    Uniprot ID   -
Organism   Streptococcus suis strain NSUI060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1769988..1781649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS08940 (APQ97_08930) - 1770953..1772209 (+) 1257 WP_002936184.1 ISL3-like element ISSsu6 family transposase -
  APQ97_RS08945 (APQ97_08935) - 1772302..1772577 (-) 276 WP_002936247.1 HU family DNA-binding protein -
  APQ97_RS08950 (APQ97_08940) - 1772667..1773263 (-) 597 WP_002936249.1 YpmS family protein -
  APQ97_RS08955 (APQ97_08945) - 1773235..1774068 (-) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  APQ97_RS08960 (APQ97_08950) - 1774061..1774894 (-) 834 WP_002936253.1 DegV family protein -
  APQ97_RS08965 (APQ97_08955) recN 1774988..1776649 (-) 1662 WP_002936255.1 DNA repair protein RecN Machinery gene
  APQ97_RS08970 (APQ97_08960) - 1776652..1777077 (-) 426 WP_002936261.1 arginine repressor -
  APQ97_RS08975 (APQ97_08965) - 1777070..1777891 (-) 822 WP_002936263.1 TlyA family RNA methyltransferase -
  APQ97_RS08980 (APQ97_08970) - 1777884..1778753 (-) 870 WP_002936266.1 polyprenyl synthetase family protein -
  APQ97_RS08985 (APQ97_08975) - 1778753..1778968 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  APQ97_RS08990 (APQ97_08980) xseA 1778943..1780286 (-) 1344 WP_002936271.1 exodeoxyribonuclease VII large subunit -
  APQ97_RS08995 (APQ97_08985) - 1780453..1781361 (+) 909 WP_002936272.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62728.97 Da        Isoelectric Point: 4.7093

>NTDB_id=137424 APQ97_RS08965 WP_002936255.1 1774988..1776649(-) (recN) [Streptococcus suis strain NSUI060]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDKFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=137424 APQ97_RS08965 WP_002936255.1 1774988..1776649(-) (recN) [Streptococcus suis strain NSUI060]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAATGGGATGACCATTCT
ATCTGGTGAAACAGGGGCAGGAAAGTCTATTATCATCGATGCCATGAACCTGATGTTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTTAGCCGTGT
CAATGGACAAATGGTCAACTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATAAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGCAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGCTAGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGGGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTTGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTGGATAATCTAGACT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCAG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATTTCTACCAACCCAGGTGAAGACTTCAAACCACTGGT
TAAGGTAGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTTATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.509

100

0.448