Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SD90_RS08310 Genome accession   NZ_CP010450
Coordinates   1694797..1695510 (+) Length   237 a.a.
NCBI ID   WP_032463072.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS638     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689797..1700510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD90_RS08300 (SD90_08315) treC 1690866..1692494 (-) 1629 WP_032463070.1 alpha,alpha-phosphotrehalase -
  SD90_RS08305 (SD90_08320) treP 1692562..1694586 (-) 2025 WP_032463071.1 PTS system trehalose-specific EIIBC component -
  SD90_RS08310 (SD90_08325) treR 1694797..1695510 (+) 714 WP_032463072.1 trehalose operon repressor Regulator
  SD90_RS08315 (SD90_08330) - 1695790..1696128 (-) 339 Protein_1603 winged helix-turn-helix transcriptional regulator -
  SD90_RS08320 (SD90_08335) - 1696314..1697171 (+) 858 WP_032463073.1 VOC family protein -
  SD90_RS08325 (SD90_08340) yaaA 1697213..1697944 (+) 732 WP_032463074.1 peroxide stress protein YaaA -
  SD90_RS08330 (SD90_08345) nrdG 1698118..1698732 (-) 615 WP_021775544.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SD90_RS08335 (SD90_08350) - 1698747..1699241 (-) 495 WP_011055085.1 GNAT family N-acetyltransferase -
  SD90_RS08340 (SD90_08355) - 1699250..1700185 (-) 936 WP_032463075.1 Gfo/Idh/MocA family protein -
  SD90_RS09400 - 1700214..1700360 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27650.82 Da        Isoelectric Point: 9.6307

>NTDB_id=137411 SD90_RS08310 WP_032463072.1 1694797..1695510(+) (treR) [Streptococcus pyogenes strain NGAS638]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKASLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=137411 SD90_RS08310 WP_032463072.1 1694797..1695510(+) (treR) [Streptococcus pyogenes strain NGAS638]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAA
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.949

98.734

0.671

Multiple sequence alignment